View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_1D_low_29 (Length: 216)
Name: NF9873_1D_low_29
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 39076713 - 39076846
Alignment:
| Q |
70 |
aattggaatatcattccaaggacgaagtgatggcgaaaaactggactgaagggtccccctatgggcggaaaaagtcgaaccttggccaagaaacgcaggc |
169 |
Q |
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| T |
39076713 |
aattggaatatcattccaaggacgaagtgatggcgaaaaactggactgaagggtccccctatgggcggaaaaagtcgaaccttggccaagaaacgcaggc |
39076812 |
T |
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| Q |
170 |
gaattaaccataaacccggttctattcatctcag |
203 |
Q |
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| T |
39076813 |
gaattaaccataaacccggttctattcatatcag |
39076846 |
T |
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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 14276502 - 14276574
Alignment:
| Q |
7 |
aaaaggagtatatatcccatagaatatagggaaagatccaagcataactttaaaactaaaagaaattggaata |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14276502 |
aaaaggagtatatatcccatagaatatagggaaagatccaagcataactttaaaactaaaagaaattggaata |
14276574 |
T |
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