View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_1D_low_3 (Length: 690)

Name: NF9873_1D_low_3
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_1D_low_3
NF9873_1D_low_3
[»] chr6 (7 HSPs)
chr6 (330-596)||(26268467-26268726)
chr6 (102-226)||(2759202-2759327)
chr6 (109-228)||(28963824-28963944)
chr6 (229-277)||(26268336-26268384)
chr6 (109-192)||(29157136-29157222)
chr6 (110-174)||(15501673-15501737)
chr6 (151-227)||(15645695-15645771)
[»] chr2 (12 HSPs)
chr2 (17-208)||(30637187-30637379)
chr2 (98-231)||(30635784-30635917)
chr2 (102-191)||(6296858-6296945)
chr2 (102-226)||(10159665-10159786)
chr2 (102-191)||(22845430-22845518)
chr2 (103-191)||(35602657-35602745)
chr2 (105-191)||(28856147-28856231)
chr2 (120-226)||(30659169-30659271)
chr2 (160-229)||(17328443-17328512)
chr2 (154-191)||(19588682-19588719)
chr2 (102-179)||(30629915-30629992)
chr2 (234-277)||(33527724-33527767)
[»] chr8 (13 HSPs)
chr8 (102-226)||(31448811-31448934)
chr8 (102-226)||(43301690-43301813)
chr8 (102-225)||(4237288-4237409)
chr8 (102-225)||(4242027-4242148)
chr8 (107-191)||(8330329-8330411)
chr8 (102-184)||(25361668-25361747)
chr8 (102-191)||(37772777-37772866)
chr8 (105-163)||(21959473-21959529)
chr8 (102-191)||(34817682-34817771)
chr8 (114-181)||(14036507-14036572)
chr8 (151-226)||(18945004-18945079)
chr8 (102-191)||(42973153-42973242)
chr8 (234-274)||(19195946-19195986)
[»] chr3 (11 HSPs)
chr3 (102-226)||(8888941-8889064)
chr3 (102-226)||(8884195-8884318)
chr3 (102-225)||(3673592-3673713)
chr3 (109-225)||(3693646-3693760)
chr3 (102-191)||(10585128-10585214)
chr3 (102-225)||(8070705-8070824)
chr3 (102-225)||(3034670-3034791)
chr3 (102-191)||(631995-632084)
chr3 (102-180)||(45903522-45903598)
chr3 (234-277)||(7578657-7578700)
chr3 (234-277)||(31136872-31136915)
[»] scaffold0182 (1 HSPs)
scaffold0182 (102-226)||(8828-8951)
[»] chr7 (16 HSPs)
chr7 (102-191)||(27257280-27257367)
chr7 (102-191)||(40864343-40864432)
chr7 (104-224)||(47102560-47102681)
chr7 (102-193)||(23866782-23866870)
chr7 (102-175)||(9649907-9649980)
chr7 (102-173)||(11017025-11017101)
chr7 (102-228)||(13343374-13343500)
chr7 (151-220)||(8077029-8077098)
chr7 (119-226)||(19641315-19641421)
chr7 (102-193)||(10499074-10499163)
chr7 (102-193)||(10504103-10504192)
chr7 (102-138)||(18330336-18330372)
chr7 (154-183)||(9010415-9010444)
chr7 (102-139)||(40997790-40997827)
chr7 (166-226)||(1044244-1044304)
chr7 (129-177)||(11040568-11040616)
[»] chr5 (20 HSPs)
chr5 (102-191)||(21322983-21323070)
chr5 (102-226)||(12044078-12044201)
chr5 (102-225)||(557722-557843)
chr5 (102-193)||(32460491-32460582)
chr5 (102-191)||(13300432-13300519)
chr5 (110-225)||(36941219-36941332)
chr5 (102-191)||(31732612-31732698)
chr5 (102-184)||(41997708-41997790)
chr5 (102-225)||(562494-562613)
chr5 (102-225)||(36936457-36936578)
chr5 (102-184)||(42002499-42002581)
chr5 (102-160)||(36949777-36949835)
chr5 (102-184)||(24435126-24435204)
chr5 (229-277)||(27813776-27813824)
chr5 (99-191)||(3666935-3667023)
chr5 (104-172)||(23347857-23347925)
chr5 (102-189)||(8041205-8041286)
chr5 (328-362)||(27813906-27813940)
chr5 (103-191)||(23976383-23976469)
chr5 (105-171)||(2452036-2452101)
[»] chr4 (12 HSPs)
chr4 (105-226)||(41817810-41817930)
chr4 (102-191)||(3992715-3992802)
chr4 (102-191)||(34561468-34561555)
chr4 (102-178)||(7899900-7899973)
chr4 (102-175)||(13520932-13521005)
chr4 (102-184)||(31297472-31297553)
chr4 (111-191)||(39320625-39320703)
chr4 (232-275)||(11673492-11673535)
chr4 (234-277)||(55468968-55469011)
chr4 (102-139)||(15541600-15541637)
chr4 (151-224)||(26187815-26187888)
chr4 (102-134)||(36209183-36209215)
[»] scaffold0041 (1 HSPs)
scaffold0041 (102-191)||(34667-34754)
[»] chr1 (11 HSPs)
chr1 (102-225)||(3095115-3095236)
chr1 (105-184)||(40232337-40232415)
chr1 (102-184)||(33055849-33055929)
chr1 (106-191)||(13894310-13894395)
chr1 (102-191)||(41096897-41096982)
chr1 (234-275)||(40679192-40679233)
chr1 (127-178)||(8273126-8273177)
chr1 (238-277)||(34428499-34428538)
chr1 (234-277)||(48921002-48921045)
chr1 (102-136)||(14204512-14204546)
chr1 (109-184)||(23254159-23254236)
[»] scaffold0060 (2 HSPs)
scaffold0060 (102-191)||(51858-51945)
scaffold0060 (102-183)||(46919-46994)
[»] scaffold0061 (1 HSPs)
scaffold0061 (102-191)||(48904-48987)
[»] scaffold0017 (1 HSPs)
scaffold0017 (102-191)||(149647-149730)
[»] scaffold0070 (2 HSPs)
scaffold0070 (102-191)||(59469-59555)
scaffold0070 (102-191)||(63671-63757)
[»] scaffold0628 (2 HSPs)
scaffold0628 (109-226)||(7457-7575)
scaffold0628 (102-169)||(5747-5814)
[»] scaffold0045 (1 HSPs)
scaffold0045 (102-184)||(83974-84056)
[»] scaffold0484 (1 HSPs)
scaffold0484 (102-184)||(7983-8062)
[»] scaffold0015 (1 HSPs)
scaffold0015 (105-163)||(213319-213375)
[»] scaffold0131 (1 HSPs)
scaffold0131 (102-181)||(8622-8700)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 330 - 596
Target Start/End: Original strand, 26268467 - 26268726
Alignment:
Q  330 tgtttgtagaaaaaagattttgaataattaaatgaaattgatgcttctaacnnnnnnncaaacagttttgccatctagttcttaaaatccaaggaacatt 429  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  26268467 tgtttatagaaaaaagattttgaataattaaatgaaattgatgcttctaacaaaaaa-caaacagttttgccatctagttcttaaaatccaaggaacatt 26268565  T
Q  430 agcagaaaactttaaatctaaacaaaccaacatagaatcagttttcaaccataggtgagtgtaaccctttttgtgggcagttttgcatagcaagtatagc 529  Q
    ||||||| |||||||| ||||||||||||||      | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26268566 agcagaagactttaaagctaaacaaaccaac------tgagtttccaaccataggtgagtgtaaccctttttgtgggcagttttgcatagcaagtatagc 26268659  T
Q  530 agccaaaagttcagcatgaaaggcatttacctaacctaattctgagcaaaacggccaatctagagac 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  26268660 agccaaaagttcagcatgaaaggcatttacctaacctaattctgagcaaaacggccgatgtagagac 26268726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 2759202 - 2759327
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaaga-aggtgca 200  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||| |  ||||||||||||| |||||||| |||||||| | |||||| | |||| ||    
T  2759202 tagtgtagtgtgaattgaaaaatgtgaaagtcccacatcgaatggaacatacacattagtagtatttatataatgggggtgcacctctaatagaggtaca 2759301  T
Q  201 taattaattgaacaaagtaagcacta 226  Q
    ||||||  ||||| ||||||||||||    
T  2759302 taattatgtgaacgaagtaagcacta 2759327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 28963824 - 28963944
Alignment:
Q  109 gtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaaga--aggtgcataatta 206  Q
    ||||||||| ||||||||||||||||||||| | | | | | |||||||||||||||||||||||  ||||||||| ||||||||   ||| ||||||||    
T  28963824 gtgtgaatt-aaaaaagtggaagtcccacattggatgcaactcacacattagtagtgtttatatatcgggggtgtacctctaagagggggtacataatta 28963922  T
Q  207 attgaacaaagtaagcactaaa 228  Q
    |  |||| ||||||||||||||    
T  28963923 agagaacgaagtaagcactaaa 28963944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 26268336 - 26268384
Alignment:
Q  229 tgagaatgcccaattttagattctctaccttttgaaaaggttttggtat 277  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26268336 tgagaatgcccaattttagattctctatcttttgaaaaggttttggtat 26268384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 29157136 - 29157222
Alignment:
Q  109 gtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattag--tagtgtttatatagtgg-gggtgtatctctaag 192  Q
    |||||||||||||||| ||||||||| |||| | | ||||   |||||||||  ||||||||||||||||| ||||||| |||||||    
T  29157136 gtgtgaattgaaaaaaatggaagtcctacattggatggattagacacattagtatagtgtttatatagtggagggtgtacctctaag 29157222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 15501737 - 15501673
Alignment:
Q  110 tgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatag 174  Q
    |||||||||||||||||||||||   |||| ||| | ||| ||||||| ||||||||| ||||||    
T  15501737 tgtgaattgaaaaaagtggaagttatacatagaatgaatcacacacatgagtagtgttcatatag 15501673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 15645771 - 15645695
Alignment:
Q  151 cacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcataattaattgaacaaagtaagcactaa 227  Q
    ||||||||||| || ||||||||||| ||||| | |||||||  | | ||||||||  ||||| |||||||||||||    
T  15645771 cacacattagtggtatttatatagtgagggtgcacctctaagcggctacataattatgtgaacgaagtaagcactaa 15645695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 30637379 - 30637187
Alignment:
Q  17 ctcttagatccctagaa-ttgtaaagttgtttgatttgtgtgatgtaaactcatttgtagagcagaatcgcagcttacttgtaaaatagtgtagtgtgaa 115  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30637379 ctcttggatccctagaaattgtaaagttgtttgatttttgtgatgtaaactcatttgtagagcagaatcgcaacttacttgtaaaatagtgtagtgtgaa 30637280  T
Q  116 ttgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcataattaat 208  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  30637279 ttgaaaaaagtggaagtcccgcatcggacggatcccacactttattagtgtttatatagtgggggtgtacctctaaggaggtgcataattaat 30637187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 30635917 - 30635784
Alignment:
Q  98 aaaatagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||  ||||| |||||||| ||||||| ||||    
T  30635917 aaaatagtgtagtgtgaattgaaaaaagtggaagtcccacatcggacggatcccacactttattagtgtttgaatagtaggggtgtacctctaaggaggt 30635818  T
Q  198 gcataattaattgaacaaagtaagcactaaatga 231  Q
    |||||||||| ||||| ||||| |||||||||||    
T  30635817 gcataattaagtgaaccaagtatgcactaaatga 30635784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 6296858 - 6296945
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||||||||||| ||||||||| | ||||  |||||||||||||||||||||||||||||||||| ||||||    
T  6296858 tagtgtagtgtgaattgaaaaaagtggaagacccacatcggatggat--cacacattagtagtgtttatatagtgggggtgtacctctaa 6296945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 10159665 - 10159786
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| ||||||||||||||||||||||||||||||||| | |||   |||| ||||||||||||||||||||||||||||| ||||||| |||| |||    
T  10159665 tagtgttgtgtgaattgaaaaaagtggaagtcccacatcggatgga--acacatattagtagtgtttatatagtgggggtgtacctctaag-aggtacat 10159761  T
Q  202 aattaattgaacaaagtaagcacta 226  Q
    | |||  || || ||||||||||||    
T  10159762 agttatgtggacgaagtaagcacta 10159786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 22845518 - 22845430
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||| ||||||||||| ||||| | ||||| ||||||| |||||||||||||| ||||||||||| ||||||    
T  22845518 tagtgtagtgtgaattgaaaaa-gtggaagtcccgcatcggatggatctcacacatcagtagtgtttatatggtgggggtgtacctctaa 22845430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 35602745 - 35602657
Alignment:
Q  103 agtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    ||||| ||||||||||||||||||||||||| ||||||| | ||| | ||||||||||||||||||||||| ||| |||||| ||||||    
T  35602745 agtgttgtgtgaattgaaaaaagtggaagtctcacatcggatggaacacacacattagtagtgtttatatattggaggtgtacctctaa 35602657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 28856231 - 28856147
Alignment:
Q  105 tgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    ||||||||||||||||||||||||||||||||||||  | ||||  |||||||||||||||||||||| |||||| |||| ||||||    
T  28856231 tgtagtgtgaattgaaaaaagtggaagtcccacatcagatggat--cacacattagtagtgtttatatggtggggatgtacctctaa 28856147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 30659271 - 30659169
Alignment:
Q  120 aaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcataattaattgaacaaagta 219  Q
    |||||||||||||||||||||| | ||| |    ||||||||||||||||||||||||||||||| ||||||| |||| |||| ||| |||||| |||||    
T  30659271 aaaaagtggaagtcccacatcggatggaaca---acattagtagtgtttatatagtgggggtgtacctctaag-aggtacatagttatttgaacgaagta 30659176  T
Q  220 agcacta 226  Q
    |||||||    
T  30659175 agcacta 30659169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 17328512 - 17328443
Alignment:
Q  160 gtagtgtttatatagtgggggtgtatctctaagaaggtgcataattaattgaacaaagtaagcactaaat 229  Q
    ||||||||||||||||||| ||||  ||| |||  ||||||||||||| |||||||||||||||||||||    
T  17328512 gtagtgtttatatagtgggtgtgttcctccaagggggtgcataattaagtgaacaaagtaagcactaaat 17328443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 19588682 - 19588719
Alignment:
Q  154 acattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  19588682 acattagtagtgtttatatagtgggggtgtacctctaa 19588719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 30629992 - 30629915
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggg 179  Q
    ||||||||||||||||||||||| ||||||||  |||| | |  |||| | || ||||||||| ||||||||||||||    
T  30629992 tagtgtagtgtgaattgaaaaaaatggaagtcttacattggatagatcacccatattagtagtttttatatagtgggg 30629915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 33527724 - 33527767
Alignment:
Q  234 atgcccaattttagattctctaccttttgaaaaggttttggtat 277  Q
    |||||||| ||||||||  |||||||||||||||||||||||||    
T  33527724 atgcccaactttagatttactaccttttgaaaaggttttggtat 33527767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 31448811 - 31448934
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| ||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  31448811 tagtgttgtgtgaattgaaaaaagtggaagtcccacatcggatggaacacacacattagtagtgtttatatagtgggggtgtacctctaag-aggtacat 31448909  T
Q  202 aattaattgaacaaagtaagcacta 226  Q
    | |||  ||||| ||||||||||||    
T  31448910 agttatgtgaacgaagtaagcacta 31448934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 43301690 - 43301813
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| |||||||||||||||||||||||||| |||||| | ||| | || ||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  43301690 tagtgttgtgtgaattgaaaaaagtggaagtcctacatcggatggaacacatacattagtagtgtttatatagtgggggtgtacctctaag-aggtacat 43301788  T
Q  202 aattaattgaacaaagtaagcacta 226  Q
    | |||  ||||| ||||||||||||    
T  43301789 agttatctgaacgaagtaagcacta 43301813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 4237288 - 4237409
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| |||||||||||||| |||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  4237288 tagtgttgtgtgaattgaaaa-agtggaagtcccacatcggatggaacacacacattagtagtgtttatatagtgggggtgtacctctaag-aggtacat 4237385  T
Q  202 aattaattgaacaaagtaagcact 225  Q
    | |||  ||||| |||||||||||    
T  4237386 agttatgtgaacgaagtaagcact 4237409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 4242027 - 4242148
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| |||||||||||||| |||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  4242027 tagtgttgtgtgaattgaaaa-agtggaagtcccacatcggatggaacacacacattagtagtgtttatatagtgggggtgtacctctaag-aggtacat 4242124  T
Q  202 aattaattgaacaaagtaagcact 225  Q
    | |||  ||||| |||||||||||    
T  4242125 agttatgtgaacgaagtaagcact 4242148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 8330329 - 8330411
Alignment:
Q  107 tagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    ||||||||||||||||||||| ||||||||||||| | |||||  |||||||||||||||||||||||| |||||||| ||||||    
T  8330329 tagtgtgaattgaaaaaagtgaaagtcccacatcggatggatc--acacattagtagtgtttatatagtaggggtgtacctctaa 8330411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 25361668 - 25361747
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgta 184  Q
    |||||||||||||||||||||| ||||||||||||||||| | |||||  ||||||||||||| |||||||||||||| ||||    
T  25361668 tagtgtagtgtgaattgaaaaa-gtggaagtcccacatcggatggatc--acacattagtagtatttatatagtggggatgta 25361747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 37772866 - 37772777
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaag---tggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||||    |||||||||||||||||  |||||  ||||||||||||||||||||||||||||||||| ||||||    
T  37772866 tagtgtagtgtgaattgaaaaaaaaaatggaagtcccacatcgat-ggatc--acacattagtagtgtttatatagtgggggtgtacctctaa 37772777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 21959529 - 21959473
Alignment:
Q  105 tgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtag 163  Q
    ||||||||||||||||||||||||||||| |||||| || ||||  |||||||||||||    
T  21959529 tgtagtgtgaattgaaaaaagtggaagtctcacatcaaatggat--cacacattagtag 21959473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 34817682 - 34817771
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaag--tggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    ||||||||||| |||||||||||   ||||||| | |||||| | |||||  |||||||||||||||||||||| |||| ||||| ||||||    
T  34817682 tagtgtagtgtaaattgaaaaaaaaatggaagttctacatcggatggatc--acacattagtagtgtttatatattgggagtgtacctctaa 34817771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 14036572 - 14036507
Alignment:
Q  114 aattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggt 181  Q
    |||||||||||||||||||| ||||| ||| ||||  |||| | || |||||||||||||||||||||    
T  14036572 aattgaaaaaagtggaagtctcacattgaatggat--cacatactattagtgtttatatagtgggggt 14036507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 18945004 - 18945079
Alignment:
Q  151 cacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcataattaattgaacaaagtaagcacta 226  Q
    ||||||||||||||||||||||| | ||||| || ||||||   ||||||||||||| ||||  ||||||| ||||    
T  18945004 cacacattagtagtgtttatataattggggtatacctctaaaggggtgcataattaagtgaatgaagtaaggacta 18945079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 42973242 - 42973153
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||| | |||| || ||||||||||||||| ||||||  | | | | |||| |||| || ||||||||||||||||||||| ||||||    
T  42973242 tagtgttgcgtgacttaaaaaaagtggaagtctcacatcagatgaaacacacatattaataatgtttatatagtgggggtgtacctctaa 42973153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 19195986 - 19195946
Alignment:
Q  234 atgcccaattttagattctctaccttttgaaaaggttttgg 274  Q
    |||||||| ||||||||| | ||||||||||||||||||||    
T  19195986 atgcccaactttagattcaccaccttttgaaaaggttttgg 19195946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 8889064 - 8888941
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| ||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  8889064 tagtgttgtgtgaattgaaaaaagtggaagtcccacatcggatggaacacacacattagtagtgtttatatagtgggggtgtacctctaag-aggtacat 8888966  T
Q  202 aattaattgaacaaagtaagcacta 226  Q
    | |||  ||||| ||||||||||||    
T  8888965 agttatgtgaacgaagtaagcacta 8888941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 8884318 - 8884195
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| |||||||||||||||| |||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  8884318 tagtgttgtgtgaattgaaaaaaatggaagtcccacatcggatggaacacacacattagtagtgtttatatagtgggggtgtacctctaag-aggtacat 8884220  T
Q  202 aattaattgaacaaagtaagcacta 226  Q
    | |||   |||| ||||||||||||    
T  8884219 agttatgagaacgaagtaagcacta 8884195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 3673713 - 3673592
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| ||||||||||||||| ||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  3673713 tagtgttgtgtgaattgaaaaa-gtggaagtcccacatcggatggaacacacacattagtagtgtttatatagtgggggtgtacctctaag-aggtacat 3673616  T
Q  202 aattaattgaacaaagtaagcact 225  Q
    | |||  ||||| |||||||||||    
T  3673615 agttatgtgaacgaagtaagcact 3673592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 109 - 225
Target Start/End: Complemental strand, 3693760 - 3693646
Alignment:
Q  109 gtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcataattaat 208  Q
    ||||||||||||||| ||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||      
T  3693760 gtgtgaattgaaaaa-gtggaagtcccacatcggatggaacacacacattagtagtgtttatatagtgggggtgtacctctaag-aggtacatagttatg 3693663  T
Q  209 tgaacaaagtaagcact 225  Q
    ||||| |||||||||||    
T  3693662 tgaacgaagtaagcact 3693646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 10585128 - 10585214
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||| ||||||||||||||||| | |||||  ||||||||||||||||||||||||||||||||| ||||||    
T  10585128 tagtgtagtgtgaattgaaaaa-gtggaagtcccacatcggatggatc--acacattagtagtgtttatatagtgggggtgtacctctaa 10585214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 8070824 - 8070705
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| |||||||||||||||| |||||||||||||||| | ||| |  ||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  8070824 tagtgttgtgtgaattgaaaaaa-tggaagtcccacatcggatggaac--acacattagtagtgtttatatagtgggggtgtacctctaag-aggtacat 8070729  T
Q  202 aattaattgaacaaagtaagcact 225  Q
    | |||  ||||| |||||||||||    
T  8070728 agttatgtgaacgaagtaagcact 8070705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 3034791 - 3034670
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| ||||||||||||||| ||||||||||||||||| | |||   |||||||||||||||||||||||||||||||||| |||||| |||||  ||    
T  3034791 tagtgttgtgtgaattgaaaaa-gtggaagtcccacatcggatggaatacacacattagtagtgtttatatagtgggggtgtacctctaa-aaggtatat 3034694  T
Q  202 aattaattgaacaaagtaagcact 225  Q
    | |||  ||||| |||||||||||    
T  3034693 agttatgtgaacgaagtaagcact 3034670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 632084 - 631995
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||| ||||||||||| |||||||| |||||  ||| ||| | ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  632084 tagtttagtgtgaattaaaaaaagtagaagtttcacgtcggatggatccctcacattagtagtgtttatatagtgggggtgtacctctaa 631995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 45903522 - 45903598
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtggggg 180  Q
    ||||||||||||||||||||||| |||||||| ||||||| |  |||  ||||||||||||||||||||||||||||||    
T  45903522 tagtgtagtgtgaattgaaaaaattggaagtctcacatcggatagat--cacacattagtagtgtttatatagtggggg 45903598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 7578657 - 7578700
Alignment:
Q  234 atgcccaattttagattctctaccttttgaaaaggttttggtat 277  Q
    |||||||| ||||||||  |||||||||||||||||||||||||    
T  7578657 atgcccaactttagatttactaccttttgaaaaggttttggtat 7578700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 31136872 - 31136915
Alignment:
Q  234 atgcccaattttagattctctaccttttgaaaaggttttggtat 277  Q
    |||||||| ||||||||  |||||||||||||||||||||||||    
T  31136872 atgcccaactttagatttactaccttttgaaaaggttttggtat 31136915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 8828 - 8951
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| |||||||||||||||||||||| |||||||||| | ||| | |||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  8828 tagtgttgtgtgaattgaaaaaagtggaaatcccacatcggatggaacacacacattagtagtgtttatatagtgggggtgtacctctaag-aggtacat 8926  T
Q  202 aattaattgaacaaagtaagcacta 226  Q
    | |||  ||||| ||||||||||||    
T  8927 agttatgtgaacgaagtaagcacta 8951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 27257367 - 27257280
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||||||||||||||||||||  | |||||  ||||||||||||||||||||||||||||||||||||||||    
T  27257367 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcagatggatc--acacattagtagtgtttatatagtgggggtgtatctctaa 27257280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 40864343 - 40864432
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaag--tggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||||   ||||||||||| |||| | |||||  |||||||||||||||||||||||||| |||||| ||||||    
T  40864343 tagtgtagtgtgaattgaaaaaaaaatggaagtcccagatcggatggatc--acacattagtagtgtttatatagtggaggtgtacctctaa 40864432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 47102681 - 47102560
Alignment:
Q  104 gtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaaga-aggtgcata 202  Q
    |||| |||| ||||||||||||||||||||||| | || | ||| | ||||||| ||||||||||||||| |||||||||| |||||| |  ||| ||||    
T  47102681 gtgttgtgtaaattgaaaaaagtggaagtcccatagcggatggaacacacacatcagtagtgtttatatattgggggtgtacctctaataggggtacata 47102582  T
Q  203 attaattgaacaaagtaagcac 224  Q
    ||||  ||||| ||||||||||    
T  47102581 attatgtgaacgaagtaagcac 47102560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 23866870 - 23866782
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaa-gtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaaga 193  Q
    |||||| |||||||||||||||| ||||||||||||||| | | |||    |||||||||||||||||||||| |||||||||| ||||||||    
T  23866870 tagtgttgtgtgaattgaaaaaaagtggaagtcccacattggatgga----acacattagtagtgtttatataatgggggtgtacctctaaga 23866782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 9649907 - 9649980
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagt 175  Q
    |||||| |||||||||||||||||||||||| |||||||| | | |   |||||||||||||||||||||||||    
T  9649907 tagtgttgtgtgaattgaaaaaagtggaagttccacatcggatgaaatacacacattagtagtgtttatatagt 9649980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 11017025 - 11017101
Alignment:
Q  102 tagtgtagtgtgaattg-----aaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatata 173  Q
    |||||||||||||||||     |||||| |||||||||||||||| | ||||| |||||||||||||||||||||||    
T  11017025 tagtgtagtgtgaattgtagaaaaaaaaatggaagtcccacatcggatggatcacacacattagtagtgtttatata 11017101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 13343374 - 13343500
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| ||||||||||||||||||||| ||||| ||||| | ||| | ||| ||||| || |||||||||| | ||||||||  |||||  |||||| |    
T  13343374 tagtgttgtgtgaattgaaaaaagtggatgtcccgcatcggatggaacacacgcattaatattgtttatataattggggtgtacatctaaagaggtgcgt 13343473  T
Q  202 aattaattgaacaaagtaagcactaaa 228  Q
    ||||   |||| | |||||||||||||    
T  13343474 aattttgtgaatatagtaagcactaaa 13343500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 8077098 - 8077029
Alignment:
Q  151 cacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcataattaattgaacaaagtaa 220  Q
    |||||||||||||| |||||||| |||||||||| |||||| | ||| ||||||||  ||||||||||||    
T  8077098 cacacattagtagtatttatatattgggggtgtacctctaatagggtacataattatgtgaacaaagtaa 8077029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 19641421 - 19641315
Alignment:
Q  119 aaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaa-ggtgcataattaattgaacaaag 217  Q
    |||||||||||| || ||||||||| | |||  ||| ||||||||||||||||||| ||||||||  |||||| || |||| |||||||  ||||| |||    
T  19641421 aaaaaagtggaaatctcacatcgaatgaatc--acatattagtagtgtttatatagcgggggtgtgcctctaataagggtgtataattatgtgaacgaag 19641324  T
Q  218 taagcacta 226  Q
    |||| ||||    
T  19641323 taagtacta 19641315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 10499074 - 10499163
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaaga 193  Q
    |||||| |||||||||||||||||||||||||||  || | | |||   |||||||||||| |||||||||| |  ||||||| ||||||||    
T  10499074 tagtgttgtgtgaattgaaaaaagtggaagtcccgaattggatgga--acacacattagtattgtttatataattagggtgtacctctaaga 10499163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 10504103 - 10504192
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaaga 193  Q
    |||||| |||||||||||||||||||||||||||  || | | |||   |||||||||||| |||||||||| |  ||||||| ||||||||    
T  10504103 tagtgttgtgtgaattgaaaaaagtggaagtcccgaattggatgga--acacacattagtattgtttatataattagggtgtacctctaaga 10504192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 18330336 - 18330372
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccaca 138  Q
    |||||| ||||||||||||||||||||||||||||||    
T  18330336 tagtgttgtgtgaattgaaaaaagtggaagtcccaca 18330372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 9010444 - 9010415
Alignment:
Q  154 acattagtagtgtttatatagtgggggtgt 183  Q
    ||||||||||||||||||||||||||||||    
T  9010444 acattagtagtgtttatatagtgggggtgt 9010415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 40997790 - 40997827
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacat 139  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  40997790 tagtgtagtgtgaatcgaaaaaagtggaaatcccacat 40997827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 1044304 - 1044244
Alignment:
Q  166 tttatatagtgggggtgtatctctaagaaggtgcataattaattgaacaaagtaagcacta 226  Q
    |||||||| |||||||||| |||||||| ||| | ||||||  ||||| ||||||||||||    
T  1044304 tttatataatgggggtgtagctctaagagggtacgtaattatgtgaacgaagtaagcacta 1044244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 11040568 - 11040616
Alignment:
Q  129 aagtcccacatcgaacggatcccacacattagtagtgtttatatagtgg 177  Q
    ||||| ||||| ||| | ||| |||||||||||||||||||||||||||    
T  11040568 aagtctcacattgaatgaatcacacacattagtagtgtttatatagtgg 11040616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 21322983 - 21323070
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||||||||||||||||||| ||||||    
T  21322983 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcggatggat--cacacattagtagtgtttatatagtgggggtgtacctctaa 21323070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 12044078 - 12044201
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| ||||||||||||||||||| ||||||| ||||| | ||| | ||||||||||||||||||||||||||||||||||||| |||| |||| |||    
T  12044078 tagtgttgtgtgaattgaaaaaagtgaaagtccctcatcggatggaacacacacattagtagtgtttatatagtgggggtgtatctttaag-aggtacat 12044176  T
Q  202 aattaattgaacaaagtaagcacta 226  Q
    | |||  ||||| ||||||||||||    
T  12044177 agttatgtgaacgaagtaagcacta 12044201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 557843 - 557722
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| ||||||||||||||| ||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  557843 tagtgttgtgtgaattgaaaaa-gtggaagtcccacatcggatggaacacacacattagtagtgtttatatagtgggggtgtacctctaag-aggtacat 557746  T
Q  202 aattaattgaacaaagtaagcact 225  Q
    | |||  ||||| |||||||||||    
T  557745 agttatgtgaacgaagtaagcact 557722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 32460491 - 32460582
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaaga 193  Q
    |||||| |||||||||||||||||||||||| |||||||| | ||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  32460491 tagtgttgtgtgaattgaaaaaagtggaagtaccacatcggatggaacacacacattagtagtgtttatatagtgggggtgtacctctaaga 32460582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 13300432 - 13300519
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||||||||||||||||||||  | ||||  |||||||||||||||||||||||||||||||||| ||||||    
T  13300432 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcagatggat--cacacattagtagtgtttatatagtgggggtgtacctctaa 13300519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 36941219 - 36941332
Alignment:
Q  110 tgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcataattaatt 209  Q
    ||||||||||||| |||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||  |    
T  36941219 tgtgaattgaaaa-agtggaagtcccacatcggatggaacacacacattagtagtgtttatatagtgggggtgtacctctaag-aggtacatagttatgt 36941316  T
Q  210 gaacaaagtaagcact 225  Q
    |||| |||||||||||    
T  36941317 gaacgaagtaagcact 36941332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 31732698 - 31732612
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    ||||||||||||||||||||||| |||||||||||||||||  |||||  ||||||||||||||||||||||||||||||||| ||||||    
T  31732698 tagtgtagtgtgaattgaaaaaaatggaagtcccacatcgat-ggatc--acacattagtagtgtttatatagtgggggtgtacctctaa 31732612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 41997790 - 41997708
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgta 184  Q
    |||||| ||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||||| ||||||||||    
T  41997790 tagtgttgtgtgaattgaaaaaagtggaagtcccacatcggatggaacacacacattagtagtgtttatatattgggggtgta 41997708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 562613 - 562494
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| ||||||||||||||| ||||||||||||||||| | ||| |  ||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  562613 tagtgttgtgtgaattgaaaaa-gtggaagtcccacatcggatggaac--acacattagtagtgtttatatagtgggggtgtacctctaag-aggtacat 562518  T
Q  202 aattaattgaacaaagtaagcact 225  Q
    | |||  ||||| |||||||||||    
T  562517 agttatgtgaacgaagtaagcact 562494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 36936457 - 36936578
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| ||||||||||||| | ||||||||| ||||||||| ||| | ||||||||||||||||||||||||| |||||||| ||||||| |||| |||    
T  36936457 tagtgttgtgtgaattgaaaca-gtggaagtctcacatcgaatggaacacacacattagtagtgtttatatagtaggggtgtacctctaag-aggtacat 36936554  T
Q  202 aattaattgaacaaagtaagcact 225  Q
    | |||  ||||| |||||||||||    
T  36936555 agttatgtgaacgaagtaagcact 36936578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 42002581 - 42002499
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgta 184  Q
    |||||| ||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||||| || |||||||    
T  42002581 tagtgttgtgtgaattgaaaaaagtggaagtcccacatcggatggaacacacacattagtagtgtttatatattgagggtgta 42002499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 36949835 - 36949777
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattag 160  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  36949835 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcggatggatcccacacattag 36949777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 24435126 - 24435204
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgta 184  Q
    ||||||||||||||||||||||||  |||||| ||| ||||| |||||  |||||||||||||||||||||| ||||| ||||    
T  24435126 tagtgtagtgtgaattgaaaaaag--gaagtctcacttcgaatggatc--acacattagtagtgtttatataatggggttgta 24435204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 27813776 - 27813824
Alignment:
Q  229 tgagaatgcccaattttagattctctaccttttgaaaaggttttggtat 277  Q
    |||||||| | || |||||||||||||||||||||||||||||||||||    
T  27813776 tgagaatgtcaaactttagattctctaccttttgaaaaggttttggtat 27813824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 3667023 - 3666935
Alignment:
Q  99 aaatagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    ||||||||| |||| |||||||||| ||||||||||||||||| | |||   ||  |||||||||||||  ||||||||||||||| ||||||    
T  3667023 aaatagtgttgtgtaaattgaaaaaggtggaagtcccacatcggatgga--acaagcattagtagtgtt--tatagtgggggtgtacctctaa 3666935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 23347857 - 23347925
Alignment:
Q  104 gtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatat 172  Q
    ||||||||||||||||||||||| |||||||||||   || ||||| ||||||||  |||| |||||||    
T  23347857 gtgtagtgtgaattgaaaaaagtagaagtcccacactaaatggatcacacacattgatagtatttatat 23347925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 8041205 - 8041286
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctct 189  Q
    |||| ||||||||||||||||   |||||||||||||||| | ||||| ||||||    |||||||||||||||||||| ||| ||||    
T  8041205 tagtatagtgtgaattgaaaat--tggaagtcccacatcggatggatctcacaca----tagtgtttatatagtgggggcgtacctct 8041286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 328 - 362
Target Start/End: Original strand, 27813906 - 27813940
Alignment:
Q  328 cttgtttgtagaaaaaagattttgaataattaaat 362  Q
    ||||||||||||||||||| |||||||||||||||    
T  27813906 cttgtttgtagaaaaaagactttgaataattaaat 27813940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 23976383 - 23976469
Alignment:
Q  103 agtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    ||||| |||||||||||||||||||||| || |  |  | | |||||  ||||||||||| ||||||||||||| ||||||| ||||||    
T  23976383 agtgttgtgtgaattgaaaaaagtggaaatctcgtactggatggatc--acacattagtaatgtttatatagtgagggtgtacctctaa 23976469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 2452101 - 2452036
Alignment:
Q  105 tgtagtgtgaattgaaaaaa-gtggaagtcccacatcgaacggatcccacacattagtagtgtttata 171  Q
    |||||| ||||||||||||| ||||||||| || |||| | |||||  ||||||||||||||||||||    
T  2452101 tgtagtatgaattgaaaaaaagtggaagtctcatatcggatggatc--acacattagtagtgtttata 2452036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 41817930 - 41817810
Alignment:
Q  105 tgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaaga-aggtgcataa 203  Q
    |||||||||||||||||||||||||||| |||||||| | |||||  ||| |||||||||||||||||||||||||||||||||||| |  ||| |||||    
T  41817930 tgtagtgtgaattgaaaaaagtggaagttccacatcggatggatc--acatattagtagtgtttatatagtgggggtgtatctctaataggggtacataa 41817833  T
Q  204 ttaattgaacaaagtaagcacta 226  Q
    |||  ||||| ||||||||||||    
T  41817832 ttatgtgaacgaagtaagcacta 41817810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 3992715 - 3992802
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||| ||||||||||||||| ||||||||||||||||| | |||||  ||||||||||||||||||||||||||||||||| ||||||    
T  3992715 tagtgtggtgtgaattgaaaaaggtggaagtcccacatcggatggatc--acacattagtagtgtttatatagtgggggtgtacctctaa 3992802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 34561555 - 34561468
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||| ||||||||||||||||||||||||||||||| ||| | |||||  ||||||||||||| ||||||||||||||||||| ||||||    
T  34561555 tagtatagtgtgaattgaaaaaagtggaagtcccacgtcggatggatc--acacattagtagtatttatatagtgggggtgtacctctaa 34561468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 7899900 - 7899973
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtggg 178  Q
    |||||| |||||||||||||||||||||||||||||||| || ||||  ||||||||||||||||||||||||||||    
T  7899900 tagtgtggtgtgaattgaaaaaagtggaagtcccacatc-aatggat--cacacattagtagtgtttatatagtggg 7899973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 13520932 - 13521005
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagt 175  Q
    |||||| |||||||||||||||||||||||| |||||||| | | |   |||||||||||||||||||||||||    
T  13520932 tagtgttgtgtgaattgaaaaaagtggaagttccacatcggatgaaatacacacattagtagtgtttatatagt 13521005  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 31297472 - 31297553
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgta 184  Q
    |||||| |||||||||||||| ||||||||| | |||||| | ||| | |||||||| ||| |||||||||||||||||||||    
T  31297472 tagtgttgtgtgaattgaaaa-agtggaagttctacatcggatggaacacacacatttgtaatgtttatatagtgggggtgta 31297553  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 39320703 - 39320625
Alignment:
Q  111 gtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||| | |||| | |  |||  |||||||||||| ||||||||||||||||||||| ||||||    
T  39320703 gtgaattgaaaaaagtggaagttctacattggatagat--cacacattagtaatgtttatatagtgggggtgtacctctaa 39320625  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 11673535 - 11673492
Alignment:
Q  232 gaatgcccaattttagattctctaccttttgaaaaggttttggt 275  Q
    |||||||||| ||||||||||  |||||||||||||||||||||    
T  11673535 gaatgcccaactttagattctgcaccttttgaaaaggttttggt 11673492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 55468968 - 55469011
Alignment:
Q  234 atgcccaattttagattctctaccttttgaaaaggttttggtat 277  Q
    |||||||| ||||||||  |||||||||||||||||||||||||    
T  55468968 atgcccaactttagatttactaccttttgaaaaggttttggtat 55469011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 15541637 - 15541600
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacat 139  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  15541637 tagtgtagtgcgaattgaagaaagtggaagtcccacat 15541600  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 26187815 - 26187888
Alignment:
Q  151 cacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcataattaattgaacaaagtaagcac 224  Q
    |||||| ||||||| |||||||||||||| |||| ||| ||   | ||||||||||| ||||| ||||||||||    
T  26187815 cacacactagtagtatttatatagtggggttgtacctcaaatgggatgcataattaagtgaacgaagtaagcac 26187888  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 36209183 - 36209215
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcc 134  Q
    |||||| ||||||||||||||||||||||||||    
T  36209183 tagtgttgtgtgaattgaaaaaagtggaagtcc 36209215  T

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Target: scaffold0041 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 34667 - 34754
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||  ||||||||| |||||||||||||||||||||||| ||||||    
T  34667 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgtatggat--cacacattaatagtgtttatatagtgggggtgtacctctaa 34754  T

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Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 3095236 - 3095115
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaagaaggtgcat 201  Q
    |||||| ||||||||||||||| ||||||||||||||||| | | | | |||||||||||||||||||||||||||||||||| || |||| |||| |||    
T  3095236 tagtgttgtgtgaattgaaaaa-gtggaagtcccacatcggatgaaacacacacattagtagtgtttatatagtgggggtgtacctttaag-aggtacat 3095139  T
Q  202 aattaattgaacaaagtaagcact 225  Q
    | |||  |||||||||||||||||    
T  3095138 agttatgtgaacaaagtaagcact 3095115  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 40232337 - 40232415
Alignment:
Q  105 tgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgta 184  Q
    ||||||||||||||||||||||||||||||||||||| | ||||| ||||  ||||||||||||||||||||||||||||    
T  40232337 tgtagtgtgaattgaaaaaagtggaagtcccacatcggatggatcacaca-tttagtagtgtttatatagtgggggtgta 40232415  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 33055929 - 33055849
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgta 184  Q
    ||||| ||||||||||||||||| |||||||||||||||| | ||||  ||||||||||||||||||||||||||| ||||||    
T  33055929 tagtgcagtgtgaattgaaaaaaatggaagtcccacatcggatggat--cacacattagtagtgtttatatagtggaggtgta 33055849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 13894395 - 13894310
Alignment:
Q  106 gtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||| ||||| ||||||||||| |||| |||||||| | |||||| |||||||| ||||||||||||||| |||| ||||||||||    
T  13894395 gtagagtgaaatgaaaaaagtgaaagttccacatcggatggatcctacacattaatagtgtttatatagtaggggcgtatctctaa 13894310  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 41096897 - 41096982
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||| |||||| |||||||||||||||  | ||||  ||||||||| |||||||||||||||||||||||| ||||||    
T  41096897 tagtgtagtgtgaatt-aaaaaaatggaagtcccacatc-catggat--cacacattattagtgtttatatagtgggggtgtacctctaa 41096982  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 40679192 - 40679233
Alignment:
Q  234 atgcccaattttagattctctaccttttgaaaaggttttggt 275  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  40679192 atgcccaactttagattttctaccttttgaaaaggttttggt 40679233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 8273126 - 8273177
Alignment:
Q  127 ggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtggg 178  Q
    ||||||||||||||| | ||| | ||||||||||||||| ||||||||||||    
T  8273126 ggaagtcccacatcggatggagcacacacattagtagtgcttatatagtggg 8273177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 34428499 - 34428538
Alignment:
Q  238 ccaattttagattctctaccttttgaaaaggttttggtat 277  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  34428499 ccaactttagattttctaccttttgaaaaggttttggtat 34428538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 48921002 - 48921045
Alignment:
Q  234 atgcccaattttagattctctaccttttgaaaaggttttggtat 277  Q
    |||||||| ||||||||  |||||||||||||||||||||||||    
T  48921002 atgcccaactttagatttactaccttttgaaaaggttttggtat 48921045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 14204512 - 14204546
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtccca 136  Q
    |||||| ||||||||||||||||||||||||||||    
T  14204512 tagtgttgtgtgaattgaaaaaagtggaagtccca 14204546  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 23254159 - 23254236
Alignment:
Q  109 gtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattag--tagtgtttatatagtgggggtgta 184  Q
    |||||||||||||| ||||||||||||| || | |  |||| ||||||||||  || ||||||||||||||| |||||    
T  23254159 gtgtgaattgaaaagagtggaagtcccaaattggatagatcacacacattagtataatgtttatatagtgggtgtgta 23254236  T

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Target: scaffold0060 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 51858 - 51945
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||||||||||||| ||| ||| | ||||  ||||||||||||||||||||||||| |||||||| ||||||    
T  51858 tagtgtagtgtgaattgaaaaaagtggaagtcacacgtcggatggat--cacacattagtagtgtttatatagtaggggtgtacctctaa 51945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 46919 - 46994
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgt 183  Q
    |||||||||||||||||||||||||||||||||||||||| | |||      |||||||||||||||||||||| |||||||    
T  46919 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcggatgga------acattagtagtgtttatatagtaggggtgt 46994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 48904 - 48987
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||||    |||||||||||||||||    
T  48904 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcggatggat--cacacattagtagtgtttat----tgggggtgtatctctaa 48987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 149730 - 149647
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||||    |||||||||||||||||    
T  149730 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcggatggat--cacacattagtagtgtttat----tgggggtgtatctctaa 149647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 59555 - 59469
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||| |||||| |||||||||| | |||||  ||||||||||| ||||||||||||||||||||| ||||||    
T  59555 tagtgtagtgtgaattgaaaaa-gtggaaatcccacatcggatggatc--acacattagtaatgtttatatagtgggggtgtacctctaa 59469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 63757 - 63671
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaa 191  Q
    |||||||||||||||||||||| |||||| |||||||||| | |||||  ||||||||||| ||||||||||||||||||||| ||||||    
T  63757 tagtgtagtgtgaattgaaaaa-gtggaaatcccacatcggatggatc--acacattagtaatgtttatatagtgggggtgtacctctaa 63671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 7575 - 7457
Alignment:
Q  109 gtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgtatctctaaga-aggtgcataattaa 207  Q
    ||||||||| ||||||||||||||||||||||| | ||| | |||||| ||| ||||||||||| |||||| |||| |||||| |  ||| ||||||||     
T  7575 gtgtgaatttaaaaaagtggaagtcccacatcggatggaacacacacaatagaagtgtttatatcgtggggttgtacctctaacaggggtacataattat 7476  T
Q  208 ttgaacaaagtaagcacta 226  Q
     ||||| ||||||||||||    
T  7475 gtgaacgaagtaagcacta 7457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 5814 - 5747
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgttta 169  Q
    |||||| |||||||||||||||| || |||||||||||| || ||| | ||||| |||||||||||||    
T  5814 tagtgttgtgtgaattgaaaaaaatgaaagtcccacatcaaatggaacacacactttagtagtgttta 5747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 84056 - 83974
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgta 184  Q
    |||||| |||||||||||||| |||| |||||| |||| ||| ||| | ||||||||||||||||||||||||||| ||||||    
T  84056 tagtgttgtgtgaattgaaaagagtgaaagtcctacattgaatggaacacacacattagtagtgtttatatagtggaggtgta 83974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 8062 - 7983
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggtgta 184  Q
    |||||||||| ||||||||||| ||||||||||||||||| | ||||  ||||||||||| || |||||||||||||| ||||    
T  8062 tagtgtagtgagaattgaaaaa-gtggaagtcccacatcggatggat--cacacattagtggtatttatatagtggggatgta 7983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 213319 - 213375
Alignment:
Q  105 tgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtag 163  Q
    ||||||||||||||||||||||||||||| |||||| || ||||  |||||||||||||    
T  213319 tgtagtgtgaattgaaaaaagtggaagtctcacatcaaatggat--cacacattagtag 213375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 8700 - 8622
Alignment:
Q  102 tagtgtagtgtgaattgaaaaaagtggaagtcccacatcgaacggatcccacacattagtagtgtttatatagtgggggt 181  Q
    |||||| ||||||||||||||||||||||||| ||||| | |   ||| |||||| ||||| |||||||||| |||||||    
T  8700 tagtgttgtgtgaattgaaaaaagtggaagtctcacattgtataaatcacacaca-tagtaatgtttatataatgggggt 8622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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