View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_1D_low_35 (Length: 207)
Name: NF9873_1D_low_35
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 15144602 - 15144436
Alignment:
| Q |
5 |
ggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
15144602 |
ggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagttggaccactgtgtccttggcaacaaagcaggctagagaaagagaa |
15144503 |
T |
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| Q |
105 |
gaatgctagtcacaattggactccactgtggagtggtgatactccaatgcaaaggtatcagatagaa |
171 |
Q |
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| T |
15144502 |
gaatgcgagtcacaattggacgccactgtggagtggtgatactccaatgcaaaggtatcagatagaa |
15144436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 7e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 10766081 - 10766250
Alignment:
| Q |
5 |
ggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaa |
104 |
Q |
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|||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| || |
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| T |
10766081 |
ggtgctatgttatgagaaaaatgagtcataacaagatgaagcttgatgggagagctggaccactatgtccttggcagcaaagtaggctagagaaagaaaa |
10766180 |
T |
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| Q |
105 |
gaatgctagtcacaattggactccactgtggagtggtgatactccaatgcaaaggtatcagatagaaaat |
174 |
Q |
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| T |
10766181 |
gcttgccagtcacaattggacaccagtgtggagtggtgataatccaaggcaaaggtatcaaatagaaaat |
10766250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 26294171 - 26294066
Alignment:
| Q |
16 |
atgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaagaatgctagtc |
115 |
Q |
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| T |
26294171 |
atgagaaaaatgagtcaaaacaagatgaaacttgatgggagagttgg-ccactgtg---ttggcagcaaagcaggctagagaaggagaagattgccagtc |
26294076 |
T |
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| Q |
116 |
acaattggac |
125 |
Q |
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|||||||||| |
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| T |
26294075 |
acaattggac |
26294066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 43823300 - 43823348
Alignment:
| Q |
10 |
tatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagag |
58 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43823300 |
tatgttatgagaaaaatgagtcttaacaagatgaaacttgatgggagag |
43823348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 47266115 - 47265946
Alignment:
| Q |
5 |
ggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaa |
104 |
Q |
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|||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| || |
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| T |
47266115 |
ggtgctatgttatgagaaaaatgagtcataacaagatgaagcttgatgggagagctggaccactatgtccttggcagcaaagtaggctagagaaagaaaa |
47266016 |
T |
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| Q |
105 |
gaatgctagtcacaattggactccactgtggagtggtgatactccaatgcaaaggtatcagatagaaaat |
174 |
Q |
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| ||| |||||||||||||| ||| ||||||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
47266015 |
gcttgccagtcacaattggacaccagtgtggagtggtgataatccaaggcaaaggtatcaaatagaaaat |
47265946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 41017626 - 41017457
Alignment:
| Q |
5 |
ggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaa |
104 |
Q |
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|||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| || |
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| T |
41017626 |
ggtgctatgttatgagaaaaatgagtcataacaagatgaagcttgatgggagagctggaccactatgtccttggcagcaaagtaggctagagaaagaaaa |
41017527 |
T |
|
| Q |
105 |
gaatgctagtcacaattggactccactgtggagtggtgatactccaatgcaaaggtatcagatagaaaat |
174 |
Q |
| |
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| || |||||||||||||| ||| ||||||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
41017526 |
gcttgtcagtcacaattggacaccagtgtggagtggtgataatccaaggcaaaggtatcaaatagaaaat |
41017457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 23964341 - 23964457
Alignment:
| Q |
74 |
cttggcagcaatgcaggctagagaaagagaagaatgctagtcacaattggactccactgtggagtggtgatactccaatgcaaaggtatcagatagaaaa |
173 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23964341 |
cttggcagcaaagcaggctagagaaagagaagaatgccagtcacaattggacaccattgtggagtggtgatactccaatgcaaaggtatcagatagaaaa |
23964440 |
T |
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| Q |
174 |
tagttacaaagtgaagg |
190 |
Q |
| |
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||| ||||||||||||| |
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| T |
23964441 |
tagctacaaagtgaagg |
23964457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 63714 - 63882
Alignment:
| Q |
5 |
ggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaa |
104 |
Q |
| |
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|||||||||| |||||||| |||||||| ||||| |||||||| |||||||||||||| || ||||||||||||||||| |||| |||||||||||||| |
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| T |
63714 |
ggtgttatgtcatgagaaagatgagtcagaacaaaatgaaactagatgggagagctggacctttgtgtccttggcagcaaagcagactagagaaagagaa |
63813 |
T |
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| Q |
105 |
gaatgctagtcacaattggactccactgtggagtggtgatactccaatgcaaaggtatcagatagaaaa |
173 |
Q |
| |
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|| ||| || ||||| ||||| || || |||| |||||||| | ||| |||||||||||| || ||||| |
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| T |
63814 |
gattgcaagccacaactggacacccctatggaatggtgataatgcaaggcaaaggtatcatattgaaaa |
63882 |
T |
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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 4642606 - 4642740
Alignment:
| Q |
5 |
ggtgttatgtaatgagaaaaatgagtcaaaacaagatgaaacttgatgggagagctggcccactgtgtccttggcagcaatgcaggctagagaaagagaa |
104 |
Q |
| |
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|||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| | |||||||||||||| || |
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| T |
4642606 |
ggtgctatgttatgagaaaaatgagtcataacaagatgaagcttgatgggagagttggaccactgtgtccttggcagcaaagtaggctagagaaagaaaa |
4642705 |
T |
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| Q |
105 |
gaatgctagtcacaattggactccactgtggagtg |
139 |
Q |
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| ||| | |||||||||||| ||| ||||||||| |
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| T |
4642706 |
gcttgccaatcacaattggacaccaatgtggagtg |
4642740 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 17891907 - 17891994
Alignment:
| Q |
64 |
ccactgtgtccttggcagcaatgcaggctagagaaagagaagaatgctagtcacaattggactccactgtggagtggtgatactccaa |
151 |
Q |
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||||| ||||||||| ||||| | ||| ||||||||||||||| ||| | |||| ||||| |||| ||||||||||||||||||| |
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| T |
17891907 |
ccactatgtccttggaagcaaagtaggatagagaaagagaagactgccatcaacaagtggacaccacattggagtggtgatactccaa |
17891994 |
T |
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