View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_1D_low_5 (Length: 488)
Name: NF9873_1D_low_5
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 22 - 483
Target Start/End: Complemental strand, 42603386 - 42602925
Alignment:
| Q |
22 |
gttcagtctctaatggttcatcggagagtcagagtttgagcttgaggttgaatgagaatgcatcagaacatgaagagggtaatggttcagggaatcctta |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42603386 |
gttcagtctctaatggttcatcggagagtcagagtttgagcttgaggttgaatgagaatgcatcagaacatgaagagggtaatggttcagggaatcctta |
42603287 |
T |
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| Q |
122 |
tcagcatgaaggtactgaagtcgagacaggagaagaggacgaagaagaggagcatcgtggttttgagcttttgagcttgcttactggttgtgtcgatgcc |
221 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42603286 |
tcagcatgaaggtactgaagtggagacaggagaagaggacgaagaagaggagcatcgtggttttgagcttttgagcttgcttactggttgtgtcgatgcc |
42603187 |
T |
|
| Q |
222 |
attgggtcaaggaatgtggctgcagtcaaccatttcattgcaaaattgggtgatcttgcatctccaagaggaacttcgataagccgaatttgtgcttatt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42603186 |
attgggtcaaggaatgtggctgcagtcaaccatttcattgcaaaattgggtgatcttgcatctccaagaggaacttcgataagccgaatttgtgcttatt |
42603087 |
T |
|
| Q |
322 |
ttacagaagccttagccatcagagtcactaggctttggcctcatgtttttcaaatcagtgccacttctcgcgattttgacagggtggtggatgatgatga |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42603086 |
ttacagaagccttagccatcagagtcactaggctttggcctcatgtttttcaaatcagtgccacttctcgcgattttgacagggtggtggatgatgatga |
42602987 |
T |
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| Q |
422 |
aactgtcactgcattgaggcttctaaaccaggttaccccaattcccaagtttcttcatttca |
483 |
Q |
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| T |
42602986 |
aactgtcactgcattgaggcttctaaaccaggttaccccaattcccaagtttcttcatttca |
42602925 |
T |
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Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 392 - 483
Target Start/End: Complemental strand, 37498502 - 37498411
Alignment:
| Q |
392 |
cgattttgacagggtggtggatgatgatgaaactgtcactgcattgaggcttctaaaccaggttaccccaattcccaagtttcttcatttca |
483 |
Q |
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||||||||||| ||| ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
37498502 |
cgattttgacaaggttgtggacgatgatgaaattgtcactgcattgaggcttttaaaccaggttaccccaatttccaagtttcttcatttca |
37498411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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