View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_1D_low_6 (Length: 414)

Name: NF9873_1D_low_6
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_1D_low_6
NF9873_1D_low_6
[»] chr2 (5 HSPs)
chr2 (1-109)||(29889877-29889985)
chr2 (1-107)||(901481-901587)
chr2 (1-107)||(29884872-29884978)
chr2 (275-354)||(29393063-29393142)
chr2 (219-272)||(817075-817128)
[»] chr8 (14 HSPs)
chr8 (1-107)||(4746413-4746519)
chr8 (1-106)||(2404253-2404358)
chr8 (1-106)||(4751438-4751543)
chr8 (1-110)||(18347059-18347168)
chr8 (1-109)||(2409492-2409600)
chr8 (1-107)||(18343016-18343122)
chr8 (16-107)||(36962887-36962978)
chr8 (49-107)||(36959123-36959181)
chr8 (203-271)||(8472618-8472686)
chr8 (204-271)||(32593464-32593531)
chr8 (207-271)||(541761-541825)
chr8 (3-45)||(15695220-15695262)
chr8 (2-33)||(36959092-36959123)
chr8 (231-271)||(20075586-20075626)
[»] chr4 (5 HSPs)
chr4 (1-107)||(39544887-39544993)
chr4 (1-105)||(9406158-9406262)
chr4 (1-80)||(39571395-39571474)
chr4 (203-271)||(37078940-37079008)
chr4 (231-272)||(30666554-30666595)
[»] chr1 (4 HSPs)
chr1 (1-107)||(52891029-52891135)
chr1 (74-107)||(26415420-26415453)
chr1 (219-272)||(47065085-47065138)
chr1 (228-272)||(47065837-47065881)
[»] chr7 (4 HSPs)
chr7 (1-107)||(34042132-34042238)
chr7 (1-107)||(34047138-34047244)
chr7 (203-271)||(1012240-1012308)
chr7 (203-271)||(321888-321954)
[»] chr3 (2 HSPs)
chr3 (4-110)||(34531216-34531322)
chr3 (4-107)||(36394222-36394325)
[»] chr5 (2 HSPs)
chr5 (206-271)||(4446332-4446397)
chr5 (219-272)||(22160471-22160524)
[»] chr6 (2 HSPs)
chr6 (219-272)||(20592056-20592109)
chr6 (219-272)||(19314507-19314560)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 29889877 - 29889985
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29889877 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 29889976  T
Q  101 ttctacaat 109  Q
    |||||||||    
T  29889977 ttctacaat 29889985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 901587 - 901481
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  901587 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 901488  T
Q  101 ttctaca 107  Q
    |||||||    
T  901487 ttctaca 901481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29884872 - 29884978
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29884872 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 29884971  T
Q  101 ttctaca 107  Q
    |||||||    
T  29884972 ttctaca 29884978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 29393063 - 29393142
Alignment:
Q  275 tggccctgattttcgatcactttagcaattttctcagcaacaccgaaaccatcacctcgatgaagtgagttatcagtccc 354  Q
    ||||| |||||||||||||||| |||||||| ||||||| | || |||| |||| ||||||||| ||||  |||||||||    
T  29393063 tggccgtgattttcgatcacttcagcaatttgctcagcatcgcccaaactatcaactcgatgaactgagacatcagtccc 29393142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 817075 - 817128
Alignment:
Q  219 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 272  Q
    |||| |||||| |||||| ||||| |||| ||||||||||||||||||||||||    
T  817075 acactcctcctcaagctgaagcatacatgtcatatgcaccaagcttgttacaaa 817128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4746413 - 4746519
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4746413 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 4746512  T
Q  101 ttctaca 107  Q
    |||||||    
T  4746513 ttctaca 4746519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 2404253 - 2404358
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2404253 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 2404352  T
Q  101 ttctac 106  Q
    ||||||    
T  2404353 ttctac 2404358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 4751438 - 4751543
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4751438 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 4751537  T
Q  101 ttctac 106  Q
    ||||||    
T  4751538 ttctac 4751543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 18347059 - 18347168
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18347059 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaatgatggcataatatattctaataatgaccaataatatcatttgactt 18347158  T
Q  101 ttctacaatt 110  Q
    ||||||||||    
T  18347159 ttctacaatt 18347168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 2409492 - 2409600
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2409492 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgaataataatggcataatatattctaataatgaccaataatatcatttgactt 2409591  T
Q  101 ttctacaat 109  Q
    |||||||||    
T  2409592 ttctacaat 2409600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 18343016 - 18343122
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343016 ataaaaaggaattacaataaacataatgataaataatgtcttatcataactaataatggcataatatattctaataatgaccaataatatcatttgactt 18343115  T
Q  101 ttctaca 107  Q
    |||||||    
T  18343116 ttctaca 18343122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 36962887 - 36962978
Alignment:
Q  16 aataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttctaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36962887 aataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttctaca 36962978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 36959123 - 36959181
Alignment:
Q  49 actaataatggcataatatattctaataatgaccaataatatcatttgacttttctaca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36959123 actaataatggcataatatattctaataatgaccaataatatcatttgacttttctaca 36959181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 8472686 - 8472618
Alignment:
Q  203 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 271  Q
    |||||||| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  8472686 aagattcttaactttaacacccctcctcaagctggagcatacatgacatatgcaccaagcttgttacaa 8472618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 32593531 - 32593464
Alignment:
Q  204 agattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 271  Q
    ||||||| |||||| ||||| ||||| |||||||| ||| |||||||| |||||||||||||||||||    
T  32593531 agattcttaattttaacacctctcctcaagctggaacatgcatgacatgtgcaccaagcttgttacaa 32593464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 541761 - 541825
Alignment:
Q  207 ttctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 271  Q
    |||| |||||| ||||||||||| ||||||||||||   ||||||| ||||||||||||||||||    
T  541761 ttcttaattttaacacccctcctcaagctggagcatatctgacataagcaccaagcttgttacaa 541825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 15695262 - 15695220
Alignment:
Q  3 aaaaaggaattacaataaacataatgacaaataatgtcttatc 45  Q
    |||||||||||||| |||||||||||||||||||| |||||||    
T  15695262 aaaaaggaattacagtaaacataatgacaaataatttcttatc 15695220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 36959092 - 36959123
Alignment:
Q  2 taaaaaggaattacaataaacataatgacaaa 33  Q
    ||||||||||||||||||||||||||||||||    
T  36959092 taaaaaggaattacaataaacataatgacaaa 36959123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 20075626 - 20075586
Alignment:
Q  231 aagctggagcattcatgacatatgcaccaagcttgttacaa 271  Q
    |||||||||||| ||||||||||||||  ||||||||||||    
T  20075626 aagctggagcatacatgacatatgcacacagcttgttacaa 20075586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 39544993 - 39544887
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39544993 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 39544894  T
Q  101 ttctaca 107  Q
    |||||||    
T  39544893 ttctaca 39544887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 9406158 - 9406262
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9406158 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgacaaataatggcataatatattcaaataatgaccaataatatcatttgactt 9406257  T
Q  101 ttcta 105  Q
    |||||    
T  9406258 ttcta 9406262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 39571474 - 39571395
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatga 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39571474 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatga 39571395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 37079008 - 37078940
Alignment:
Q  203 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 271  Q
    |||||||| || ||| ||||||||||| |||||| ||||| ||||||||||  ||||||||||||||||    
T  37079008 aagattcttaactttaacacccctcctcaagctgtagcatacatgacatataaaccaagcttgttacaa 37078940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 30666595 - 30666554
Alignment:
Q  231 aagctggagcattcatgacatatgcaccaagcttgttacaaa 272  Q
    |||||||||||| ||||  |||||||||||||||||||||||    
T  30666595 aagctggagcatgcatgttatatgcaccaagcttgttacaaa 30666554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 52891135 - 52891029
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52891135 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 52891036  T
Q  101 ttctaca 107  Q
    |||||||    
T  52891035 ttctaca 52891029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 26415420 - 26415453
Alignment:
Q  74 ataatgaccaataatatcatttgacttttctaca 107  Q
    |||||||| |||||||||||||||||||||||||    
T  26415420 ataatgacaaataatatcatttgacttttctaca 26415453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 47065085 - 47065138
Alignment:
Q  219 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 272  Q
    |||||| |||| ||||||| | || |||| ||||||||||||||||||||||||    
T  47065085 acacccttcctcaagctggggtatacatgtcatatgcaccaagcttgttacaaa 47065138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 47065881 - 47065837
Alignment:
Q  228 ctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 272  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||    
T  47065881 ctgaagctagagcatacatgtcatatgcaccaagtttgttacaaa 47065837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 34042238 - 34042132
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34042238 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccgataatatcatttgactt 34042139  T
Q  101 ttctaca 107  Q
    |||||||    
T  34042138 ttctaca 34042132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 34047244 - 34047138
Alignment:
Q  1 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34047244 ataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccgataatatcatttgactt 34047145  T
Q  101 ttctaca 107  Q
    |||||||    
T  34047144 ttctaca 34047138  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 1012308 - 1012240
Alignment:
Q  203 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 271  Q
    |||||||| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  1012308 aagattcttaactttaacacccctcctcaagctggagcatacatgacatatgcaccaagcttgttacaa 1012240  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 321954 - 321888
Alignment:
Q  203 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 271  Q
    |||||||| |||||| ||| ||||||| |||||| ||||| ||||||||  ||||||||||||||||||    
T  321954 aagattcttaattttaacatccctcctcaagctgaagcatacatgacat--gcaccaagcttgttacaa 321888  T

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Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 34531216 - 34531322
Alignment:
Q  4 aaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttc 103  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34531216 aaaaggaattacaataaacataatgacaaataatgttttatcatgactaataatggcataatatattctaataacgaccaataatatcatttgacttttc 34531315  T
Q  104 tacaatt 110  Q
    |||||||    
T  34531316 tacaatt 34531322  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 36394325 - 36394222
Alignment:
Q  4 aaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | |||||||||    
T  36394325 aaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatgacataatatattctaataatgatcaataatatcctctgacttttc 36394226  T
Q  104 taca 107  Q
    ||||    
T  36394225 taca 36394222  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 4446397 - 4446332
Alignment:
Q  206 attctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 271  Q
    ||||| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  4446397 attcttaactttaacacccctcctcaagctggagcatacatgacatatgcaccaagcttgttacaa 4446332  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 22160471 - 22160524
Alignment:
Q  219 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 272  Q
    |||| |||||| |||||| ||||| |||| ||||| ||||||||||||||||||    
T  22160471 acactcctcctcaagctgaagcatacatgtcatatacaccaagcttgttacaaa 22160524  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 20592056 - 20592109
Alignment:
Q  219 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 272  Q
    |||| |||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  20592056 acactcctcctcaagctggagcatacatgtcatatgcaccaagcttgttacaaa 20592109  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 19314560 - 19314507
Alignment:
Q  219 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 272  Q
    |||| |||||| |||||||||||| | || |||||||||||||||||| |||||    
T  19314560 acactcctcctcaagctggagcatacttgtcatatgcaccaagcttgtaacaaa 19314507  T

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