View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_1D_low_7 (Length: 359)
Name: NF9873_1D_low_7
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 32914869 - 32915212
Alignment:
| Q |
16 |
ggacatcaaaagccacctccccaaatagaaaacagcacactaaaagcccaaaataggaaattatgatgctaatacatgcagcacaggaaaagggaaaaca |
115 |
Q |
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| T |
32914869 |
ggacaccaaaagccacctccccaaatagaaaacagcacactaaaagcccaaaataggaaattatgatgctaatacatgcagcacaggaaaagggaaaaca |
32914968 |
T |
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| Q |
116 |
acaacacagaacagcccttaagcactgcctatacaattgatcctatgtactccatcactgcataccgaagcctcaaaaccatccagctagaactgtgcat |
215 |
Q |
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| T |
32914969 |
acaacacagaacagcccttaagcactgcctatacaattgatcctatgtacttcatcactgcataccgaagcctcaaaaccatccagctagaactgtgcat |
32915068 |
T |
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| Q |
216 |
ctgtaatatgcgctcctaaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32915069 |
ctgtaatatgcgctcctaaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtac |
32915168 |
T |
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| Q |
316 |
tgtcactacaccccaattagctacttcctcgatagacattcttg |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32915169 |
tgtcactacaccccaattagctacttcctcgatagacattcttg |
32915212 |
T |
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