View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9873_1D_low_9 (Length: 354)
Name: NF9873_1D_low_9
Description: NF9873_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_1D_low_9 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 33810643 - 33810962
Alignment:
| Q |
13 |
gacatcagttatgtagtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaa |
112 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810643 |
gacatcggttatgctgtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaa |
33810742 |
T |
|
| Q |
113 |
ctgccaaaaagtgcttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgtagattcaagaaaatctacatc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33810743 |
ctgccaaaaagtgcttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatatagattcaagaaaatctacatc |
33810842 |
T |
|
| Q |
213 |
tggatatttgattacttttgcagggggagctgtctcatggcaatcgcgactacaaaaatgcgttgctttaagtaccacagaagcagagtacatcgcaatc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810843 |
tggatatttgattacttttgcagggggagctgtctcatggcaatctcgactacaaaagtgcgttgctttaagtaccacagaagcagagtacatcgcaatc |
33810942 |
T |
|
| Q |
313 |
actgaaggttgtaaggagat |
332 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
33810943 |
actgaaggctgtaaggagat |
33810962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 33815561 - 33815880
Alignment:
| Q |
13 |
gacatcagttatgtagtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaa |
112 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815561 |
gacatcggttatgctgtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaa |
33815660 |
T |
|
| Q |
113 |
ctgccaaaaagtgcttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgtagattcaagaaaatctacatc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33815661 |
ctgccaaaaagtgcttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatatagattcaagaaaatctacatc |
33815760 |
T |
|
| Q |
213 |
tggatatttgattacttttgcagggggagctgtctcatggcaatcgcgactacaaaaatgcgttgctttaagtaccacagaagcagagtacatcgcaatc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815761 |
tggatatttgattacttttgcagggggagctgtctcatggcaatctcgactacaaaagtgcgttgctttaagtaccacagaagcagagtacatcgcaatc |
33815860 |
T |
|
| Q |
313 |
actgaaggttgtaaggagat |
332 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
33815861 |
actgaaggctgtaaggagat |
33815880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 4836820 - 4836501
Alignment:
| Q |
13 |
gacatcagttatgtagtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaa |
112 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4836820 |
gacatcggttatgttgtaggagtcgtgagtagattcctatcaaacccaggaaaggaacactggagtgctgtgaaatggatactgaggtatataaaaggaa |
4836721 |
T |
|
| Q |
113 |
ctgccaaaaagtgcttatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgtagattcaagaaaatctacatc |
212 |
Q |
| |
|
|| ||||| || |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4836720 |
ctttaaaaaaatgtttatgttttggcaagggaaatcaaatgctcgctggatatgtagatactgatatggccggagatgtggattcaagaaaatctacatc |
4836621 |
T |
|
| Q |
213 |
tggatatttgattacttttgcagggggagctgtctcatggcaatcgcgactacaaaaatgcgttgctttaagtaccacagaagcagagtacatcgcaatc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||| ||||| || |||||||||||| |
|
|
| T |
4836620 |
cggatatttgattacttttgcagggggagctgtctcatggcaatcgcgattacaaaagtgcattgctttgagtaccacggaagctgaatacatcgcaatc |
4836521 |
T |
|
| Q |
313 |
actgaaggttgtaaggagat |
332 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4836520 |
actgaaggttgtaaggagat |
4836501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 28 - 332
Target Start/End: Complemental strand, 54968471 - 54968167
Alignment:
| Q |
28 |
gtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaagtgct |
127 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||| || |||| |||||||||||||||| |||||||||||| ||||||||||||| | || | |
|
|
| T |
54968471 |
gtaggagttgtgagtagattcctgtcgaatccaggaaaagagcattggaatgctgtgaaatggatattgaggtatctaagaggaactgccaaacaatgtt |
54968372 |
T |
|
| Q |
128 |
tatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgtagattcaagaaaatctacatctggatatttgattac |
227 |
Q |
| |
|
| | |||||||||| ||||||| | ||| |||| |||||||||| |||||||| |||||||||||||| ||||||||||| || ||||||||||| || |
|
|
| T |
54968371 |
tgcgctttggcaatgaaaatcaattactcattgggcatgtagatgcagatatggcaggagatgtagattccagaaaatctacttccggatatttgatcac |
54968272 |
T |
|
| Q |
228 |
ttttgcagggggagctgtctcatggcaatcgcgactacaaaaatgcgttgctttaagtaccacagaagcagagtacatcgcaatcactgaaggttgtaag |
327 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| ||||||| ||| ||||||| |||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
54968271 |
ttttgcagggggagctgtttcatggcaatcacgattacaaaagtgcattgctttgagtaccacagaagctgaatacatcgcaatcactgaaggttgtaag |
54968172 |
T |
|
| Q |
328 |
gagat |
332 |
Q |
| |
|
||||| |
|
|
| T |
54968171 |
gagat |
54968167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 28 - 332
Target Start/End: Original strand, 1676 - 1980
Alignment:
| Q |
28 |
gtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaagtgct |
127 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||| || |||| || ||||||||||||| |||||||||||| ||||||||||||| | || | |
|
|
| T |
1676 |
gtaggagttgtgagtagattcctgtcgaatccaggaaaagagcattggaatgatgtgaaatggatattgaggtatctaagaggaactgccaaacaatgtt |
1775 |
T |
|
| Q |
128 |
tatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgtagattcaagaaaatctacatctggatatttgattac |
227 |
Q |
| |
|
| | |||||||||| ||||||| | ||| |||| |||||||||| |||||||| |||||||||||||| ||||||||||| || ||||||||||| || |
|
|
| T |
1776 |
tgagctttggcaatgaaaatcaattactcattgggcatgtagatgcagatatggcaggagatgtagattccagaaaatctacttccggatatttgatcac |
1875 |
T |
|
| Q |
228 |
ttttgcagggggagctgtctcatggcaatcgcgactacaaaaatgcgttgctttaagtaccacagaagcagagtacatcgcaatcactgaaggttgtaag |
327 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| ||||||| ||| ||||||| |||||||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
1876 |
ttttgcagggggagctgtttcatggcaatcacgattacaaaagtgcattgctttgagtaccacgaaagctgaatacatcgcaatcactgaaggttgtaag |
1975 |
T |
|
| Q |
328 |
gagat |
332 |
Q |
| |
|
||||| |
|
|
| T |
1976 |
gagat |
1980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 28 - 332
Target Start/End: Complemental strand, 22982400 - 22982096
Alignment:
| Q |
28 |
gtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaagtgct |
127 |
Q |
| |
|
|||||| | ||||||||||| | || |||| || ||| || || |||| ||||||||||||||||||||||||||||| ||||| ||||||| | || | |
|
|
| T |
22982400 |
gtaggaattgtgagtagattattgtcgaatctagaaaaggagcattggaatgctgtgaaatggatactgaggtatctaagaggaattgccaaacaatgtt |
22982301 |
T |
|
| Q |
128 |
tatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgtagattcaagaaaatctacatctggatatttgattac |
227 |
Q |
| |
|
| || |||||||||| ||||||| | ||| ||| |||||||||| |||||||| |||||||||||||| |||||||| || | |||||||||||||| |
|
|
| T |
22982300 |
tgtgctttggcaatgaaaatcaattactcattgcgcatgtagatgcagatatggcaggagatgtagattccagaaaatcgacttaaggatatttgattac |
22982201 |
T |
|
| Q |
228 |
ttttgcagggggagctgtctcatggcaatcgcgactacaaaaatgcgttgctttaagtaccacagaagcagagtacatcgcaatcactgaaggttgtaag |
327 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||| |||||| || |||||| |||||||||||||||||||| |
|
|
| T |
22982200 |
ttttgcagggggagctatctcttggcaatcacgactacaaaaatgcgttgctttgagtaccatagaagctgaatacatcacaatcactgaaggttgtaag |
22982101 |
T |
|
| Q |
328 |
gagat |
332 |
Q |
| |
|
||||| |
|
|
| T |
22982100 |
gagat |
22982096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 28 - 332
Target Start/End: Original strand, 23806008 - 23806312
Alignment:
| Q |
28 |
gtaggagtcgtgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaagtgct |
127 |
Q |
| |
|
|||||| | ||||||||||| | || |||| || ||| || || |||| ||||||||||||||||||||||||||||| ||||| ||||||| | || | |
|
|
| T |
23806008 |
gtaggaattgtgagtagattattgtcgaatctagaaaaggagcattggaatgctgtgaaatggatactgaggtatctaagaggaattgccaaacaatgtt |
23806107 |
T |
|
| Q |
128 |
tatgttttggcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgtagattcaagaaaatctacatctggatatttgattac |
227 |
Q |
| |
|
| || |||||||||| ||||||| | ||| ||| |||||||||| |||||||| |||||||||||||| |||||||| || | |||||||||||||| |
|
|
| T |
23806108 |
tgtgctttggcaatgaaaatcaattactcattgcgcatgtagatgcagatatggcaggagatgtagattccagaaaatcgacttaaggatatttgattac |
23806207 |
T |
|
| Q |
228 |
ttttgcagggggagctgtctcatggcaatcgcgactacaaaaatgcgttgctttaagtaccacagaagcagagtacatcgcaatcactgaaggttgtaag |
327 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||| |||||| || |||||| |||||||||||||||||||| |
|
|
| T |
23806208 |
ttttgcagggggagctatctcttggcaatcacgactacaaaaatgcgttgctttgagtaccatagaagctgaatacatcacaatcactgaaggttgtaag |
23806307 |
T |
|
| Q |
328 |
gagat |
332 |
Q |
| |
|
||||| |
|
|
| T |
23806308 |
gagat |
23806312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 38 - 306
Target Start/End: Complemental strand, 25004454 - 25004185
Alignment:
| Q |
38 |
tgagtagattcctatcaaatccaggaaaagaacactggagtgctgtgaaatggatactgaggtatctaaaaggaactgccaaaaagtgcttatgtttt-g |
136 |
Q |
| |
|
||||||||||| ||| || | || ||| ||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| | |
|
|
| T |
25004454 |
tgagtagattcaaatcgaacctagaaaatgaacactagagtgctatgaaatggatactgaggtatctaaaaggaacaggcaaaaagtgcttatgtttttg |
25004355 |
T |
|
| Q |
137 |
gcaatggaaatcaaatgctcgttggatatgtagatgctgatatggccggagatgtagattcaagaaaatctacatctggatatttgattacttttgcagg |
236 |
Q |
| |
|
|||||||| ||||||| || |||||||||||||| | ||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
25004354 |
gcaatggagatcaaattcttgttggatatgtagaagttgatatggcgggagatgtagattcaaggaaatctgcatttggatatttgattacttttacagg |
25004255 |
T |
|
| Q |
237 |
gggagctgtctcatggcaatcgcgactacaaaaatgcgttgctttaagtaccacagaagcagagtacatc |
306 |
Q |
| |
|
|||| |||||||||| || |||||||||| || |||||||||||||||||||||||| | |||||| |
|
|
| T |
25004254 |
tggagttgtctcatggatgtcatgactacaaaagtgtgttgctttaagtaccacagaagcataatacatc |
25004185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University