View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_2D_low_20 (Length: 296)

Name: NF9873_2D_low_20
Description: NF9873_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_2D_low_20
NF9873_2D_low_20
[»] chr8 (4 HSPs)
chr8 (8-274)||(2319997-2320263)
chr8 (42-152)||(38544230-38544340)
chr8 (8-48)||(9484265-9484305)
chr8 (8-51)||(10382031-10382074)
[»] chr4 (2 HSPs)
chr4 (8-274)||(16990381-16990647)
chr4 (8-48)||(52720597-52720637)
[»] chr3 (10 HSPs)
chr3 (8-274)||(37241953-37242219)
chr3 (8-274)||(1258665-1258931)
chr3 (8-274)||(34873482-34873735)
chr3 (8-100)||(13809927-13810019)
chr3 (8-51)||(44445490-44445533)
chr3 (16-51)||(34872973-34873008)
chr3 (16-51)||(37242999-37243034)
chr3 (8-51)||(41638480-41638523)
chr3 (16-49)||(1259713-1259746)
chr3 (8-48)||(46187148-46187188)
[»] chr7 (3 HSPs)
chr7 (8-274)||(31234116-31234382)
chr7 (8-51)||(41236789-41236832)
chr7 (16-48)||(31235166-31235198)
[»] chr6 (2 HSPs)
chr6 (8-154)||(18246177-18246323)
chr6 (8-50)||(32079797-32079839)
[»] chr5 (3 HSPs)
chr5 (39-150)||(39087407-39087518)
chr5 (8-51)||(3135923-3135966)
chr5 (9-49)||(27645836-27645876)
[»] chr2 (2 HSPs)
chr2 (46-150)||(20040174-20040276)
chr2 (8-50)||(16043374-16043416)
[»] chr1 (4 HSPs)
chr1 (8-51)||(41465236-41465279)
chr1 (16-51)||(41466221-41466256)
chr1 (16-51)||(45320464-45320499)
chr1 (8-48)||(33284504-33284544)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 2320263 - 2319997
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320263 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 2320164  T
Q  108 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcacagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 207  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320163 cacatctgatctcaatagcttcactttccaaatttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 2320064  T
Q  208 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttacct 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2320063 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaacaaagcatgacttacct 2319997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 38544340 - 38544230
Alignment:
Q  42 ccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaact 141  Q
    ||||||||||  ||||||||| |||||||||||||| || |||||||||| ||||||||| |||| |||| || ||   ||| | ||| | |||||||||    
T  38544340 ccaccatgggaaacacaagatcaatggttagattgtacacttctattaaatcttatcatgctctctcacacctaattctaatggtttctcattccaaact 38544241  T
Q  142 tttctcatctt 152  Q
    |||||||||||    
T  38544240 tttctcatctt 38544230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 9484265 - 9484305
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccat 48  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  9484265 ggtggcatttcacattggaaggtataaaacattcccaccat 9484305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 10382031 - 10382074
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 51  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||    
T  10382031 ggtggcatttcacatgcgaaggtataaaacattcccactatggg 10382074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 16990647 - 16990381
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 107  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16990647 ggtggcatttcatatgggaaggtataaaacctttccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 16990548  T
Q  108 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcacagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16990547 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 16990448  T
Q  208 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttacct 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16990447 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttacct 16990381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 52720597 - 52720637
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccat 48  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  52720597 ggtggcatttcacatgggaaggtataaaacattcccaccat 52720637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 37241953 - 37242219
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 107  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37241953 ggtggcatttcatatgggaaggtataaaaccttcctaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 37242052  T
Q  108 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcacagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37242053 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 37242152  T
Q  208 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttacct 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37242153 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttacct 37242219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 1258665 - 1258931
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1258665 ggtggcatttcacatgggaaggtataaaaccttcccaccatggatcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctcc 1258764  T
Q  108 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcacagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1258765 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctctaggctccatctcccacaaccagcaacc 1258864  T
Q  208 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttacct 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1258865 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttacct 1258931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 34873735 - 34873482
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||||||||||    
T  34873735 ggtggcatttcacatgggaaggtataaaaccttcccaccatggatcacacaagata------------gtgcatttctattaaagcttatcatgttctcc 34873648  T
Q  108 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcacagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 207  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34873647 cacatctgatctcaatagcttcactttccaaacttttgtcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 34873548  T
Q  208 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttacct 274  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  34873547 accttcaaagaaacaccaccaataattgaaacct-tttaagtgggtgaaccaaagcatgacttacct 34873482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 13809927 - 13810019
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcat 100  Q
    |||| ||||| | ||||||| | ||||||| || |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  13809927 ggtgacatttaatatgggaaaggataaaacttttccaccatgggtcacacaagataaatggttacattgtgcacttctattaaagcttatcat 13810019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 44445490 - 44445533
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 51  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  44445490 ggtggcatttcacatgggaagatataaaaccttcccaccatggg 44445533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 34872973 - 34873008
Alignment:
Q  16 ttcacatgggaaggtataaaaccttcccaccatggg 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  34872973 ttcacatgggaaggtataaaaccttcccaccatggg 34873008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 37243034 - 37242999
Alignment:
Q  16 ttcacatgggaaggtataaaaccttcccaccatggg 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  37243034 ttcacatgggaaggtataaaaccttcccaccatggg 37242999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 41638480 - 41638523
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 51  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||    
T  41638480 ggtggcatttcacatgggaaggtgtaaaaccttcccatcatggg 41638523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 1259746 - 1259713
Alignment:
Q  16 ttcacatgggaaggtataaaaccttcccaccatg 49  Q
    ||||||||||||||||||||||||||||||||||    
T  1259746 ttcacatgggaaggtataaaaccttcccaccatg 1259713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 46187148 - 46187188
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccat 48  Q
    |||||||||||||||||||| || |||||| ||||||||||    
T  46187148 ggtggcatttcacatgggaaagtgtaaaactttcccaccat 46187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 31234116 - 31234382
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 107  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  31234116 ggtggcatttcatatgggaaggtataaaaccttcccaccatggatcacacaagataaatgattagattgtacatttctattaaagcttatcatgttctcc 31234215  T
Q  108 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcacagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 207  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31234216 tacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggtcgtctccctccaggctccatctcccacaaccagcaacc 31234315  T
Q  208 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttacct 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31234316 accttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttacct 31234382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 41236789 - 41236832
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 51  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  41236789 ggtggcatttcacatgggaaggtgtaaaaccttcccaccatggg 41236832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 31235198 - 31235166
Alignment:
Q  16 ttcacatgggaaggtataaaaccttcccaccat 48  Q
    |||||||||||||||||||||||||||||||||    
T  31235198 ttcacatgggaaggtataaaaccttcccaccat 31235166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 18246177 - 18246323
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18246177 ggtggcatttcacatgggaaggtataaaactttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 18246276  T
Q  108 cacatctgatctcaatagcttcactttccaaacttttctcatcttgc 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18246277 cacatctgatctcaatagcttcactttccaaacttttctcatcttgc 18246323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 32079839 - 32079797
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatgg 50  Q
    |||||||||||||||||||| || |||||| ||||||||||||    
T  32079839 ggtggcatttcacatgggaaagtctaaaactttcccaccatgg 32079797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 39087518 - 39087407
Alignment:
Q  39 ttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaa 138  Q
    |||||||||| | ||||| || ||||||||||||||| ||||||||||| ||| ||||||||||||||||||| || |||| ||| ||||| ||||||||    
T  39087518 ttcccaccatagatcacataaaataaatggttagattttgcatttctataaaaccttatcatgttctcccacacctaatcttaattgcttctctttccaa 39087419  T
Q  139 acttttctcatc 150  Q
    ||||||||||||    
T  39087418 acttttctcatc 39087407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 3135923 - 3135966
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 51  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3135923 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 3135966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 27645836 - 27645876
Alignment:
Q  9 gtggcatttcacatgggaaggtataaaaccttcccaccatg 49  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  27645836 gtggcatttcacatgggaaggtgtaaaaccttcccaccatg 27645876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 20040276 - 20040174
Alignment:
Q  46 catgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaacttttc 145  Q
    ||||| ||||| | ||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||| ||| ||||  || ||||||||||||    
T  20040276 catggatcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggctt--ctctccaaacttttc 20040179  T
Q  146 tcatc 150  Q
    |||||    
T  20040178 tcatc 20040174  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 16043374 - 16043416
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatgg 50  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  16043374 ggtggcatttcacatgggaaggtataaagctttcccaccatgg 16043416  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 41465236 - 41465279
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 51  Q
    |||||| |||||||||||||||| ||||||||||||||||||||    
T  41465236 ggtggcttttcacatgggaaggtgtaaaaccttcccaccatggg 41465279  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 41466221 - 41466256
Alignment:
Q  16 ttcacatgggaaggtataaaaccttcccaccatggg 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  41466221 ttcacatgggaaggtataaaaccttcccaccatggg 41466256  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 45320464 - 45320499
Alignment:
Q  16 ttcacatgggaaggtataaaaccttcccaccatggg 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  45320464 ttcacatgggaaggtataaaaccttcccaccatggg 45320499  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 33284544 - 33284504
Alignment:
Q  8 ggtggcatttcacatgggaaggtataaaaccttcccaccat 48  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  33284544 ggtggcatttcacatgggagagtataaaaccttcccaccat 33284504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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