View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_2D_low_28 (Length: 255)
Name: NF9873_2D_low_28
Description: NF9873_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_2D_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 885513 - 885751
Alignment:
| Q |
1 |
taattggaataatgcactttatgtacattaacaaaatgtaagatgaactagattttccccttttattaggccttgaaatgcataatccatatattccaca |
100 |
Q |
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| T |
885513 |
taataggaataatgcactttatgtacattaacaaaatgaaagatgaactagattttccccttttattaggccttgaaatgcataatccatatattccaca |
885612 |
T |
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| Q |
101 |
tatagtaatagaaatactagttaacaaaaggtagaagcaattaatgcattcctacaaactctccctctccaactcattcatgtcatataattccaaacat |
200 |
Q |
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| T |
885613 |
tatagtaatagaaatactagttaacaaaaggtagaagcaattaatgcattcctacaaactctccctctccaactcattcatgtcatataattccaaacat |
885712 |
T |
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| Q |
201 |
ttcgcacatcaattctcatatactccacacattatgtat |
239 |
Q |
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| T |
885713 |
ttcgcacatcaattctcatatactccacacattatgtat |
885751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 1849107 - 1849159
Alignment:
| Q |
35 |
aatgtaagatgaactagattttc-cccttttattaggccttgaaatgcataat |
86 |
Q |
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| T |
1849107 |
aatgaaagatgaactagtttttttcccttatattaggccttgaaatgcataat |
1849159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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