View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_2D_low_30 (Length: 225)
Name: NF9873_2D_low_30
Description: NF9873_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_2D_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 34911484 - 34911294
Alignment:
| Q |
16 |
gaaggataattaatcttcattttactaaagtatccgtattaactattagtatgtgtttctcactatcccacatgtagatagacttaattagaatgcataa |
115 |
Q |
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| T |
34911484 |
gaaggataattaatcttcattttactaaagtatccgtattaactattagtatgtgtttctcactatcccacatgtagatagacttaattagagtgcataa |
34911385 |
T |
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| Q |
116 |
ttggaaataataataataattattatgttagttaaaaactgaaaacgacattcagtttgaaacaattttgtcggcgaaagtggccctaattgtt |
209 |
Q |
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| T |
34911384 |
ttggaaataataataataa---ttatgttcgttaaaaactgaaaacgtcattcagtttgaaacaattttgtcggcaaaagtggccctaattgtt |
34911294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 28543713 - 28543802
Alignment:
| Q |
90 |
tagatagacttaattagaatgcataattggaaataataataataattattatgttagttaaaaactgaaaacgacattcagtttgaaacaatttt |
184 |
Q |
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| T |
28543713 |
tagatagacttaattagagtgtataattggaagaaa-----acaaatatcatgttcattaaaaactgaaaacgacattcattttgaaacaatttt |
28543802 |
T |
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