View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_2D_low_6 (Length: 423)
Name: NF9873_2D_low_6
Description: NF9873_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_2D_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 2747297 - 2746918
Alignment:
| Q |
1 |
actacttcacccaaaccaaactaacaaca---caaaaacacactttctctcttttgcaacttcacttcttcatatctctgaaacatccttcaattcaaca |
97 |
Q |
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| T |
2747297 |
actacttcacccaaaccaaaccaacaacaacacaaaaacacactttctctcttttgcaacttca--------tatctctcaaacatccttcaa-----ca |
2747211 |
T |
|
| Q |
98 |
ctataatagctacctagtaccttgttctctaacacacagaca----cacttgttttgtttcttttgttaagttttatggcttaccaaaaccaacatcttt |
193 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747210 |
ctataatagctacctagtaccctgttctctaacacacaaacatacacacttgttttgtttcttttgttaagttttatggcttaccaaaaccaacatcttt |
2747111 |
T |
|
| Q |
194 |
cacaagagttaccaatccaacatttcacagaccaaaccaacaacaataacaacaactcattccgttccatattaccagactcacccgaccctaactccaa |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747110 |
cacaagagttaccaatccaacatttcacagaccaaaccaacaacaataataacaactcattccgttccatattaccagactcacccgaccctaactccaa |
2747011 |
T |
|
| Q |
294 |
acctgattccgaccctaataaccaactccaaaccacacctaactggctcaacaacgcaatacttcgtacccattacaccgacaacaacaacaa |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2747010 |
acctgattccgaccctaataaccaactccaaaccacacctaactggctcaacaacgcaatacttcgtacccactacaccgacaacaacaacaa |
2746918 |
T |
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