View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_2D_low_9 (Length: 386)
Name: NF9873_2D_low_9
Description: NF9873_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_2D_low_9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 11918189 - 11918555
Alignment:
| Q |
19 |
catcatttttatttaagtttattcttctatttatttttctctaccaaactaattcaacattagttctctaagttctcaaaattaaaaaagtttataattt |
118 |
Q |
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| T |
11918189 |
catcatttttatttaagtttattcttctatttgtttttctctaccaaacta-ttcaacattagttctgtaagttctctaaattaaaaaagtttataattt |
11918287 |
T |
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| Q |
119 |
gacttttaacctttttctaatcgagcattagtttatgaataatttgttatttaattcttcaaccagaaaaattcaaccggattcgtaaacttttagaaca |
218 |
Q |
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| T |
11918288 |
gacttttaacctttttctaatcgagcattagtttatgaataatttgttatttaattcttcaaccagaaaaattcaaccggattcgtaaacttttagaaca |
11918387 |
T |
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| Q |
219 |
tttttaattaatttccttgtaaacttttaaatactcaattctgaatacttcccaagtgatatcagtatctacagcttccaacctctgacgagtgttctct |
318 |
Q |
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| T |
11918388 |
tttttaattaatttccttgtaaacttttaaatactcaattctgaatacttcccaagtgatatcagtatctacagcttccaacctctgacgagtgttctct |
11918487 |
T |
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| Q |
319 |
cgccaatattcagcttctttagccagcatgtaagtctggaacaacaccttatatgcatcagggaacat |
386 |
Q |
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| T |
11918488 |
cgccaatattcagcttctttagccagcatgtaagtctcgaacaacaccttatatgcatcagggaacat |
11918555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 11909761 - 11909519
Alignment:
| Q |
19 |
catcatttttatttaagtttattcttctatttatttttctctaccaaactaattcaacattagttctctaagttctcaaaattaaaaaagtttataattt |
118 |
Q |
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| T |
11909761 |
catcatttttatttaagtttattcttctatttgtttttctctaccaaacta-ttcaacattagttctttaagttctctaaattaaaaaagtttataattt |
11909663 |
T |
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| Q |
119 |
gacttttaacctttttctaatcgagcattagtttatgaataatttgttatttaattcttcaaccagaaaaattcaaccggattcgtaaacttttagaaca |
218 |
Q |
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| T |
11909662 |
gacttttaatctttttctaatcgagcattagtttatgaataatttgttatttaatttttcaactagaaaaattcaaccggattcgtaaacttttagaaca |
11909563 |
T |
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| Q |
219 |
tttttaattaatttccttgtaaacttttaaatactcaattctga |
262 |
Q |
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| T |
11909562 |
tttttaattaatttccttgtaaacttttaaatactcaattctga |
11909519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 255 - 386
Target Start/End: Complemental strand, 11909409 - 11909278
Alignment:
| Q |
255 |
aattctgaatacttcccaagtgatatcagtatctacagcttccaacctctgacgagtgttctctcgccaatattcagcttctttagccagcatgtaagtc |
354 |
Q |
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| T |
11909409 |
aattctgaatacttcccaagtgatctcagtacctacaacttccaacctctgacgagtgttctctcgccaatattcagcttctttagccagcatgtaagtc |
11909310 |
T |
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| Q |
355 |
tggaacaacaccttatatgcatcagggaacat |
386 |
Q |
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| T |
11909309 |
tcgaacaacaccttatatgcatcagggaacat |
11909278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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