View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_12 (Length: 490)
Name: NF9873_high_12
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 14 - 474
Target Start/End: Original strand, 36290239 - 36290699
Alignment:
| Q |
14 |
agacataacctagaccgatgttaacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaa |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290239 |
agacataacctagaccgatgttaacatcatcagcggtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaa |
36290338 |
T |
|
| Q |
114 |
accagttttatcaaccatttgtgacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttcaggagtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36290339 |
accagttttatcaaccatttgtgacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcgagataatactttcttcaggagtt |
36290438 |
T |
|
| Q |
214 |
atatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaagat |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290439 |
atatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaagat |
36290538 |
T |
|
| Q |
314 |
caggaacaccgttcttcttgacaatcaatgtcaaaggagtgttggaaatccctttggcagaaccagcaatttcctcagtagctatgtttattgcatcaga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290539 |
caggaacaccgttcttcttgacaatcaatgtcaaaggagtgttggaaatccctttggcagaaccagcaatttcctcagtagctatgtttattgcatcaga |
36290638 |
T |
|
| Q |
414 |
aacatctttttcatcagtgaaaactgttttgctattgaattctaacaagagttctggtttt |
474 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36290639 |
aacatctttttcatcagtgaaaactgttttgccattgaattctaacaagagttctggtttt |
36290699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 31 - 437
Target Start/End: Original strand, 36312739 - 36313145
Alignment:
| Q |
31 |
atgttaacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaacca |
130 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| |||||||| |||||||| || ||||| |||||||| | |||||||||||||||||||||||||| |
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| T |
36312739 |
atgttaacatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttgttacaacagctaatgtcctcaaaccagttttatcaacca |
36312838 |
T |
|
| Q |
131 |
tttgtgacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttcaggagttatatactccataataat |
230 |
Q |
| |
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| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||| ||||| ||||| |
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| T |
36312839 |
tctgtgacatcctaatagactcacaagtactaaaatcaacagtagcagaaagaacattcaggataatgctctcttcaggagttatatagtccatgataat |
36312938 |
T |
|
| Q |
231 |
atctttaatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaagatcaggaacaccgttcttc |
330 |
Q |
| |
|
||| |||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||||||| || |||||| |
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|
| T |
36312939 |
atccttaatctgatcataaatgttatcaggttgaccatgaacaggaacacgagttatacctggaagatcaaccattgtaaggtcaggaacgccattcttc |
36313038 |
T |
|
| Q |
331 |
ttgacaatcaatgtcaaaggagtgttggaaatccctttggcagaaccagcaatttcctcagtagctatgtttattgcatcagaaacatctttttcatcag |
430 |
Q |
| |
|
|| |||||||| |||| |||||||| |||||||||||||||| ||||||| || ||||||||| ||||||| |||||||| |||| | |||||||| |
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| T |
36313039 |
ttcacaatcaaagtcagtggagtgtttgaaatccctttggcagttccagcaagctcttcagtagctgtgtttatagcatcagagacatttgcttcatcag |
36313138 |
T |
|
| Q |
431 |
tgaaaac |
437 |
Q |
| |
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| ||||| |
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|
| T |
36313139 |
ttaaaac |
36313145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 33579675 - 33579845
Alignment:
| Q |
36 |
aacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaaccatttgt |
135 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||||||| || |||| | ||||||||| ||||||||||||||||||||| ||| | |
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| T |
33579675 |
aacatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttgaagtagcagcaagtgacctcaaaccagttttatcaacagtttct |
33579774 |
T |
|
| Q |
136 |
gacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttc |
206 |
Q |
| |
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|||||||| | ||||||||||| | ||||||| |||||||||||| |||||||||||||| |||||||| |
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|
| T |
33579775 |
gacatccttaatgactcacaagtagagaaatcaatagtagcagaaagaacattcaagataatgctttcttc |
33579845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 33579866 - 33579949
Alignment:
| Q |
190 |
aagataatactttcttcaggagttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaaca |
273 |
Q |
| |
|
|||||||| |||||||| || |||| |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||||| |
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|
| T |
33579866 |
aagataatgctttcttccataggtataaactccataataatatcttcaatttgatcataactattatcatgttgaaaatgaaca |
33579949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 36 - 206
Target Start/End: Complemental strand, 15997323 - 15997153
Alignment:
| Q |
36 |
aacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaaccatttgt |
135 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||||||| || |||| | ||||||||| ||||||| ||||||||||||| ||| | |
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| T |
15997323 |
aacatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttgaagtagcagcaagtgacctcaaatcagttttatcaacagtttct |
15997224 |
T |
|
| Q |
136 |
gacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttc |
206 |
Q |
| |
|
|||||||| | ||||||||||| | ||||||| |||||||||||| |||||||||||||| |||||||| |
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|
| T |
15997223 |
gacatccttaatgactcacaagtagagaaatcaatagtagcagaaagaacattcaagataatgctttcttc |
15997153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 15997118 - 15997057
Alignment:
| Q |
212 |
ttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaaca |
273 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
15997118 |
ttataaactccataataatatcttcaatttgatcataactattatcatgttgaaaatgaaca |
15997057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 30575823 - 30575787
Alignment:
| Q |
36 |
aacatcatcagcagtaaccttctccaacaatccttca |
72 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||||| |
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|
| T |
30575823 |
aacatcatcagcagtaactttctcaaacaatccttca |
30575787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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