View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_16 (Length: 475)
Name: NF9873_high_16
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 127 - 457
Target Start/End: Original strand, 8041248 - 8041579
Alignment:
| Q |
127 |
aagactaaggcatgagttgataaatagggagtaattatttgagaatataagcttgaaatgcatctatttcaaataaaaagagcatatttataatactact |
226 |
Q |
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| T |
8041248 |
aagactaag-catgagttgacaaatagggagtaattatttgagaatataagcttgaaatgcacctatttcaaataaaaagagcatatttataatactact |
8041346 |
T |
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| Q |
227 |
c--agtttaaagttnnnnnnngaagctaaatttttgtatgacataattgccaaagaaatcagtcatcaaggcacgagcatgaggaataatctcaggaaat |
324 |
Q |
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| T |
8041347 |
cccagtttaaagttaaaaatagaagctaaatttttgtatgacataattgccaaagaaatcagtcatcaaggcacgagcatgaggaataatcttaggaaat |
8041446 |
T |
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| Q |
325 |
atcttggtcttctcttctaccgaagttgtttctaatttactgcattatagcatagattatcgatttagatttccaaagccatgccactagaaacaacatt |
424 |
Q |
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| T |
8041447 |
atcttggtcttctcttctaccgaagttgtttctaatttactgcattatagcatagattatcgatttagatttccaaagccatgccactagaaacaacatt |
8041546 |
T |
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| Q |
425 |
ggaggttcaaaatcatacctgaactgatgatca |
457 |
Q |
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| T |
8041547 |
ggaggttcaaaatcatatatgaactgatgatca |
8041579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 8040741 - 8040820
Alignment:
| Q |
16 |
gagcagagagtgcaacaacttgcccataaaaagatgtgatgataaactgaattctatcctaagggacacattctatacac |
95 |
Q |
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| T |
8040741 |
gagcagagagtgcaacaacttgcccataaaaagatgtgatgataaactgaattctatcctaagggacacattctgtacac |
8040820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 259 - 362
Target Start/End: Complemental strand, 42527754 - 42527651
Alignment:
| Q |
259 |
tgtatgacataattgccaaagaaatcagtcatcaaggcacgagcatgaggaataatctcaggaaatatcttggtcttctcttctaccgaagttgtttcta |
358 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42527754 |
tgtatgacataattgccaaagacatccgtcatcaaggcacgggcatgaggaagaatctcaggaaatatcttggtcttctcttctaccgaagctgtttcta |
42527655 |
T |
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| Q |
359 |
attt |
362 |
Q |
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|||| |
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| T |
42527654 |
attt |
42527651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 362 - 450
Target Start/End: Complemental strand, 42527618 - 42527530
Alignment:
| Q |
362 |
tactgcattatagcatagattatcgatttagatttccaaagccatgccactagaaacaacattggaggttcaaaatcatacctgaactg |
450 |
Q |
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| T |
42527618 |
tactgcattatagcacagattatcgattcagacttccaaagacatgccactagaaacaatagtggaggttcaaaatcatacctgaactg |
42527530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 42528610 - 42528526
Alignment:
| Q |
11 |
aggaggagcagagagtgcaacaacttgcccataaaaagatgtgatgataaactgaattctatcctaagggacacattctatacac |
95 |
Q |
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| T |
42528610 |
aggatgagtagaaagtgcaacaacttgcccataaaaagacgtgatgataaactgaattctattctgagggacagactctatacac |
42528526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 42528048 - 42527975
Alignment:
| Q |
112 |
aagataacagattttaagactaaggcatgagttgataaatagggagtaattatttgagaatataagcttgaaatgca |
188 |
Q |
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|||||| |||||||||||| | ||||||||||||| ||||| ||| |||| ||||||||||||||| ||||||| |
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| T |
42528048 |
aagatatcagattttaagagttaggcatgagttgacgaatagcgag---ttatctgagaatataagcttaaaatgca |
42527975 |
T |
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