View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_high_19 (Length: 452)

Name: NF9873_high_19
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_high_19
NF9873_high_19
[»] chr8 (3 HSPs)
chr8 (8-436)||(32288578-32289022)
chr8 (220-248)||(23996639-23996667)
chr8 (208-248)||(41606903-41606943)
[»] chr1 (2 HSPs)
chr1 (198-246)||(34290268-34290316)
chr1 (208-248)||(10199408-10199448)
[»] scaffold0584 (1 HSPs)
scaffold0584 (205-248)||(1330-1373)
[»] scaffold0446 (1 HSPs)
scaffold0446 (205-248)||(5456-5499)
[»] chr4 (3 HSPs)
chr4 (205-248)||(33534166-33534209)
chr4 (205-248)||(56055780-56055823)
chr4 (279-331)||(30581727-30581779)
[»] chr2 (3 HSPs)
chr2 (209-248)||(39236496-39236535)
chr2 (220-248)||(11063518-11063546)
chr2 (208-248)||(41809245-41809285)
[»] chr6 (2 HSPs)
chr6 (211-248)||(31420975-31421012)
chr6 (287-331)||(3785758-3785802)
[»] chr5 (1 HSPs)
chr5 (208-248)||(2568688-2568728)
[»] chr3 (3 HSPs)
chr3 (208-248)||(20195033-20195072)
chr3 (208-248)||(24785235-24785275)
chr3 (208-248)||(51206498-51206538)


Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Complemental strand, 32289022 - 32288578
Alignment:
Q  8 agcagagactcaagtgatagaaatttcatatactttaggcactaattacttttatctactttagtgactaaactgaagatagtgatc------------- 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  32289022 agcagagactcaagtgatagaaatttcatatactttaggcactaattacttttatctactttagtgactaaactgaagatagtgatcatttaaggattta 32288923  T
Q  95 ---gatggttaattaattctaattacaacgaagggcatgtttgaatttgctatgtgagcttatctattggcatacaaattggtaaaactgtttggaaaga 191  Q
       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32288922 atcgatggttaattaattctaattacaacgaagggcatgtttgaatttactatgtgagcttatctattggcatacaaattggtaaaactgtttggaaaga 32288823  T
Q  192 tttatgaaaaatcttgtgacatattcaaaagttgtttttagcttattttcataagctatgagagcttctgaaaaataagctgaaaacaacttattaaaac 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32288822 tttatgaaaaatcttgtgacatattcaaaagttgtttttagcttattttcataagctatgagagcttctgaaaaataagctgaaaacaacttattaaaac 32288723  T
Q  292 agcttatggtttatacgaagacagtttaacttgattttatgtttagtaatgaatgcacgagaaaggaagaagttagagaagagacatacaggtccaacat 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32288722 agcttatggtttatacgaagacagtttaacttgattttatgtttagtaatgaatgcacgagaaaggaagaagttagagaagagacatacaggtccaacat 32288623  T
Q  392 gatgtgtagccgaaggagaaccagcagtttcctctaatccatacc 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32288622 gatgtgtagccgaaggagaaccagcagtttcctctaatccatacc 32288578  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 23996639 - 23996667
Alignment:
Q  220 aagttgtttttagcttattttcataagct 248  Q
    |||||||||||||||||||||||||||||    
T  23996639 aagttgtttttagcttattttcataagct 23996667  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 41606903 - 41606943
Alignment:
Q  208 tgacatattcaaaagttgtttttagcttattttcataagct 248  Q
    |||||| ||||||||||||||| ||||||||| ||||||||    
T  41606903 tgacatgttcaaaagttgttttcagcttatttccataagct 41606943  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 34290316 - 34290268
Alignment:
Q  198 aaaaatcttgtgacatattcaaaagttgtttttagcttattttcataag 246  Q
    ||||| ||| ||||||||||| |||||||||| ||||||||||||||||    
T  34290316 aaaaagcttatgacatattcataagttgttttcagcttattttcataag 34290268  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 10199408 - 10199448
Alignment:
Q  208 tgacatattcaaaagttgtttttagcttattttcataagct 248  Q
    |||||| |||| |||||||||| ||||||||||||||||||    
T  10199408 tgacatgttcataagttgttttcagcttattttcataagct 10199448  T

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Target: scaffold0584 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0584
Description:

Target: scaffold0584; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 1330 - 1373
Alignment:
Q  205 ttgtgacatattcaaaagttgtttttagcttattttcataagct 248  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||    
T  1330 ttgtaacatattcataagttgtttttatcttattttcataagct 1373  T

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Target: scaffold0446 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 5456 - 5499
Alignment:
Q  205 ttgtgacatattcaaaagttgtttttagcttattttcataagct 248  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||    
T  5456 ttgtaacatattcataagttgtttttatcttattttcataagct 5499  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 33534166 - 33534209
Alignment:
Q  205 ttgtgacatattcaaaagttgtttttagcttattttcataagct 248  Q
    ||||||||||| || |||||||||| ||||||||||||||||||    
T  33534166 ttgtgacatatccataagttgttttcagcttattttcataagct 33534209  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 56055823 - 56055780
Alignment:
Q  205 ttgtgacatattcaaaagttgtttttagcttattttcataagct 248  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||    
T  56055823 ttgtaacatattcataagttgtttttatcttattttcataagct 56055780  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 30581727 - 30581779
Alignment:
Q  279 aacttattaaaacagcttatggtttatacgaagacagtttaacttgattttat 331  Q
    |||||||||||||||||||| | ||||||||| | ||||| |||| |||||||    
T  30581727 aacttattaaaacagcttatagcttatacgaaaatagtttgacttcattttat 30581779  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 39236496 - 39236535
Alignment:
Q  209 gacatattcaaaagttgtttttagcttattttcataagct 248  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  39236496 gacatattcataagttgtttttagcttatttttataagct 39236535  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 11063546 - 11063518
Alignment:
Q  220 aagttgtttttagcttattttcataagct 248  Q
    |||||||||||||||||||||||||||||    
T  11063546 aagttgtttttagcttattttcataagct 11063518  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 41809245 - 41809285
Alignment:
Q  208 tgacatattcaaaagttgtttttagcttattttcataagct 248  Q
    |||||| |||| |||||||||||||||||||| ||||||||    
T  41809245 tgacatgttcataagttgtttttagcttatttccataagct 41809285  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 31421012 - 31420975
Alignment:
Q  211 catattcaaaagttgtttttagcttattttcataagct 248  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  31421012 catattcataagttgttttcagcttattttcataagct 31420975  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 3785758 - 3785802
Alignment:
Q  287 aaaacagcttatggtttatacgaagacagtttaacttgattttat 331  Q
    |||||||||||| | ||||||||| |||||||||||| |||||||    
T  3785758 aaaacagcttatagcttatacgaaaacagtttaactttattttat 3785802  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 2568728 - 2568688
Alignment:
Q  208 tgacatattcaaaagttgtttttagcttattttcataagct 248  Q
    ||||||||||| ||||| |||||||||||||||||| ||||    
T  2568728 tgacatattcataagttatttttagcttattttcattagct 2568688  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 20195033 - 20195072
Alignment:
Q  208 tgacatattcaaaagttgtttttagcttattttcataagct 248  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  20195033 tgacatattcaaaagttgttttcagctt-ttttcataagct 20195072  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 24785275 - 24785235
Alignment:
Q  208 tgacatattcaaaagttgtttttagcttattttcataagct 248  Q
    |||||| |||| |||||||||||||||||||| ||||||||    
T  24785275 tgacatgttcataagttgtttttagcttatttacataagct 24785235  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 51206498 - 51206538
Alignment:
Q  208 tgacatattcaaaagttgtttttagcttattttcataagct 248  Q
    |||| ||| ||||||||||||| ||||||||||||||||||    
T  51206498 tgacctatccaaaagttgttttcagcttattttcataagct 51206538  T

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