View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9873_high_2 (Length: 570)
Name: NF9873_high_2
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_2 |
 | |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 19 - 554
Target Start/End: Original strand, 12042634 - 12043169
Alignment:
| Q |
19 |
tcaattgccaagggacagtatggggtgacttaaatgccaaggaagctagcattgagtcagtgtcaatccagagattagtccaattctcctgatatgcaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12042634 |
tcaattgccaagggacagtatggggtgacttaaatgccaaggaagctagcattgagtcagtgtcaatccagagattagtctaattctcctgatatgcaca |
12042733 |
T |
|
| Q |
119 |
gtcaatagccagaatgataccaagaatatcagcaaacatgcattagcaattctaatattataggcaaaacaaccaagactttcacctctgcaatttctga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12042734 |
ctcaatagccagaatgataccaagaatatcagcaaacatgcattagcaattctaatattataggcaaaacaaccaagactttcacctctgcaatttctga |
12042833 |
T |
|
| Q |
219 |
agattccttcacaaggtgcaaggccagtggatcccaaggaggcaccatcagcattacattttatccatgattgaataggtgtggctgccataaaacctca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12042834 |
agattccttcacaaggtgcaaggccagtggatcccaaggaggcaccatcagtattacattttatccatgattgaataggtgtggctgccataaaacctca |
12042933 |
T |
|
| Q |
319 |
atgattttaggtgctctagaatgatgacagttgacattaaaagctttcaacaatcaaagtcagcaatgaaatttattgtggtcaaagaggttaagtttcc |
418 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12042934 |
atgattttagatgctctagaattatgacagttgacattaaaagctttcaacaatcaaagtcagcaatgaaatttattgtggtcaaagaggttaagtttcc |
12043033 |
T |
|
| Q |
419 |
tgagatagaggtgctaacaataatcatattaacacaagttctggtgttaggtttgatattgttgaatctcatattgtttctacaccaccagattgcattt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12043034 |
tgagatagaggtgctaacaataatcatattaacacaagttctggtgttaggtttgatactgttgaatctcatattgtttctacaccaccagattgcattt |
12043133 |
T |
|
| Q |
519 |
aaaatattaatgactgcataagaaagaactaacttg |
554 |
Q |
| |
|
||||| |||||||||||||||| || |||||||||| |
|
|
| T |
12043134 |
aaaatgttaatgactgcataagcaataactaacttg |
12043169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 24 - 536
Target Start/End: Complemental strand, 30727 - 30215
Alignment:
| Q |
24 |
tgccaagggacagtatggggtgacttaaatgccaaggaagctagcattgagtcagtgtcaatccagagattagtccaattctcctgatatgcacagtcaa |
123 |
Q |
| |
|
||||| |||||| |||| | ||||| |||||||||||||||| |||||| || || |||||||||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
30727 |
tgccaggggacaatatgttgggacttgaatgccaaggaagctatcattgaatctgtttcaatccagagattagaccaattcttctgatatgcacattcaa |
30628 |
T |
|
| Q |
124 |
tagccagaatgataccaagaatatcagcaaaca-tgcattagcaattctaatattataggcaaaacaaccaagactttcacctctgcaatttctgaagat |
222 |
Q |
| |
|
|||| | ||| |||||||| || |||||||| | |||||||||||| | ||| ||||| ||||||||||| ||||| || ||| |||||| ||| ||||| |
|
|
| T |
30627 |
tagctaaaattataccaaggatctcagcaaaaactgcattagcaataccaatgttataagcaaaacaacccagactgtctcctttgcaatctctaaagat |
30528 |
T |
|
| Q |
223 |
tccttcacaaggtgcaaggccagtggatcccaaggaggcaccatcagcattacattttatccatgattgaataggtgtggctgccataaaacctcaatga |
322 |
Q |
| |
|
||| |||||| ||| | |||||||| || | |||||||| |||| ||||||||||| ||| |||||||||| | || ||||||||||| ||||||| |
|
|
| T |
30527 |
acctccacaagctgccaaaccagtggaacctagagaggcaccgtcagtattacattttacccaagattgaatag--ggggttgccataaaacttcaatga |
30430 |
T |
|
| Q |
323 |
ttttaggtgctctagaatgatgacagttgacattaaaagctttcaac-aatcaaagtcagcaatgaaatttattgtggtcaaagaggttaagtttcctga |
421 |
Q |
| |
|
|||| || |||||||| |||| || || ||||| || ||||||| | || |||| | | |||| |||| | ||||||||||| ||||||||||| || |
|
|
| T |
30429 |
ttttgggagctctagacagatggcatttcacattgaaggctttcagcaaaacaaaattatgaatggaattgttggtggtcaaagatgttaagtttccaga |
30330 |
T |
|
| Q |
422 |
gatagaggtgctaacaataatcatattaacacaagttctggtgttaggtttgatattgttgaatctcatattgtttctacaccaccagattgcatttaaa |
521 |
Q |
| |
|
|||||||||| ||| |||||| || ||||||||||| |||||| |||| || ||||||||| ||||||||||||||||||| ||| |||||| | |
|
|
| T |
30329 |
tgtagaggtgctggcaacaatcatgttgacacaagttctaaagttaggcttgacatcattgaatctcttattgtttctacaccaccatattacatttaga |
30230 |
T |
|
| Q |
522 |
atattaatgactgca |
536 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
30229 |
atgttaatgactgca |
30215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 49286169 - 49286338
Alignment:
| Q |
24 |
tgccaagggacagtatggggtgacttaaatgccaaggaagctagcattgagtcagtgtcaatccagagattagtccaattctcctgatatgcacagtcaa |
123 |
Q |
| |
|
||||| |||||| |||| | ||||| |||||||||||||||| |||||| || || |||||||||||||| | |||||||| |||||| || || |||| |
|
|
| T |
49286169 |
tgccaggggacaatatgttgggacttgaatgccaaggaagctatcattgaatctgtttcaatccagagattggaccaattcttctgatacgcgcattcaa |
49286268 |
T |
|
| Q |
124 |
tagccagaatgataccaagaatatcagcaaaca-tgcattagcaattctaatattataggcaaaacaacc |
192 |
Q |
| |
|
| || | ||| ||||||| || |||||||| | |||||||||||| | ||| ||||| ||||||||||| |
|
|
| T |
49286269 |
ttgctaaaattataccaaagatctcagcaaaaactgcattagcaataccaatgttataagcaaaacaacc |
49286338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 429
Target Start/End: Original strand, 16343802 - 16344039
Alignment:
| Q |
191 |
ccaagactttcacctctgcaatttctgaagattccttcacaaggtgcaaggccagtggatcccaaggaggcaccatcagcattacattttatccatgatt |
290 |
Q |
| |
|
||||||||||| || ||||||||| | ||||||||| |||||| ||| | |||| || || |||| |||||||||| ||||||||| ||||| |||| |
|
|
| T |
16343802 |
ccaagactttccccactgcaatttttaaagattcctccacaagctgctaaaccagaagaacctaaggttgcaccatcagtattacatttgatccaagatt |
16343901 |
T |
|
| Q |
291 |
gaataggtgtggctgccataaaacctcaatgattttaggtgctctagaatgatgacagttgacattaaaagctttcaac-aatcaaagtcagcaatgaaa |
389 |
Q |
| |
|
|||||| | || | ||| || || |||||||| || ||| | ||||| || || || |||||||||||||||||| || |||| |||| ||| | |
|
|
| T |
16343902 |
gaatag--gagggtaaaatatcacttctatgattttgggagcttttgaatggtgccaattaacattaaaagctttcaacaaaacaaaatcagtgatggag |
16343999 |
T |
|
| Q |
390 |
tttattgtggtcaaagaggttaagtttcctgagatagagg |
429 |
Q |
| |
|
||| |||| || || ||||||||||| ||||||||||||| |
|
|
| T |
16344000 |
tttgttgttgttaatgaggttaagttacctgagatagagg |
16344039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University