View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_20 (Length: 452)
Name: NF9873_high_20
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 7832137 - 7832415
Alignment:
| Q |
1 |
atctttttgaaactatttcaaacataggaaccttttattccttcaaaagtaatacaaatcccttactctgaaaagggaacccaaacttcacactctcttg |
100 |
Q |
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| T |
7832137 |
atctttttgaaactatttcaaacataggaaccttttattccttcaaaagtaatacaaatcccttagtctgaaaagggaacccaaacttcacactctcttg |
7832236 |
T |
|
| Q |
101 |
tcccaacattatcaaaccgaacaaagggaggttttggggaagcatctccataacatacaaaggttattcccaaaggctcctcggcaacccaaaaacacac |
200 |
Q |
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| T |
7832237 |
tcccaacattatcaatccgaacaaagggaggttttggggaagca----------------------ttctcaaaggctcctcggcaacccaaaaacgcac |
7832314 |
T |
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| Q |
201 |
ccatctctcgctaggaggagcaatattcaaattcctagtactattctttcttatatcacctgaaaagtggggaatgataaatgagttcgacatataattc |
300 |
Q |
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| T |
7832315 |
ccatctcttgctaggaggagcaatattcaaattcctagtactcttctttcttatatcacctgaaaagtggggaatgataaatgagttcgacatataattc |
7832414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 357 - 437
Target Start/End: Original strand, 7832530 - 7832610
Alignment:
| Q |
357 |
tgcaccatataaaagtccaagagagattctaaatcacaagatacaaacacactactcaaaaaatgctacatagaaaaaagt |
437 |
Q |
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| T |
7832530 |
tgcaccatataaaagtccaagagagattctaaatcacaagatacaaacacactactcaaaaaatgctacatagaaaaaagt |
7832610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 7832449 - 7832505
Alignment:
| Q |
300 |
catataaagtcaaaagataaaaagtagcattgttgcgataaacgtagaaatcaaggc |
356 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7832449 |
cataaaaagtcaaaagataaaaagtagctttgttgcgataaacgtagaaatcaaggc |
7832505 |
T |
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