View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_21 (Length: 449)
Name: NF9873_high_21
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Original strand, 385850 - 386270
Alignment:
| Q |
15 |
acaattcaatgactaatgcaggtttaaggccaggcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
385850 |
acaattcaatgactaatgcaggtttaaggccaggcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaa |
385949 |
T |
|
| Q |
115 |
agttctacttgaaatgaagaccatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggttgatcttgctttg |
214 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
385950 |
agttctacttgaaatgaagacgatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggttgatcttgctttg |
386049 |
T |
|
| Q |
215 |
aggtggctgcgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgcatgaagaatgggatatacgagtcag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386050 |
aggtggctgcgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgcatgaagaatgggatatacgagtcag |
386149 |
T |
|
| Q |
315 |
ccaagccacttcttgaaacatatgttaactccgctgcaaaagttgatttgattctttacacttcgattttagcgcatcttgttaggtgtcaggatgaaga |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386150 |
ccaagccacttcttgaaacatatgttaactccgctgcaaaagttgatttcattctttacacttcgattttagcgcatcttgttaggtgtcaggatgaaga |
386249 |
T |
|
| Q |
415 |
gaatgagaggcatttgatgtc |
435 |
Q |
| |
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||||||||||||||||||||| |
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| T |
386250 |
gaatgagaggcatttgatgtc |
386270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 38729692 - 38729272
Alignment:
| Q |
15 |
acaattcaatgactaatgcaggtttaaggccaggcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
38729692 |
acaattcaatgactaatgcaggtttaaggccaggcctgagcacttatactgttcttttatctctacttgctaataagaagctggtggatgttgctgccaa |
38729593 |
T |
|
| Q |
115 |
agttctacttgaaatgaagaccatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcggttgatcttgctttg |
214 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
38729592 |
agttctacttgaaatgaagacaatgggatattctgtggatgtgacagctagtgatgttttgatggtgtatatcaaggaaggttcagtcgatcttgctttg |
38729493 |
T |
|
| Q |
215 |
aggtggctgcgtttcatgggttcgtcaggtatcagaacaaataattttataatccgacagttgtttgagtcatgcatgaagaatgggatatacgagtcag |
314 |
Q |
| |
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|| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| | |||||||||||||| |||||||| |||||||||||||| |||| |
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| T |
38729492 |
agatggctacgtttcatgggttcctcagggatcagaaccaataattttataatcaggcagttgtttgagtcgtgcatgaaaaatgggatatacgaatcag |
38729393 |
T |
|
| Q |
315 |
ccaagccacttcttgaaacatatgttaactccgctgcaaaagttgatttgattctttacacttcgattttagcgcatcttgttaggtgtcaggatgaaga |
414 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729392 |
ccaagcctcttcttgaaacatatgtgaactccgctgcaaaagttgatttgatactttacacttcgattttagcgcatcttgttaggtgtcaggatgaaga |
38729293 |
T |
|
| Q |
415 |
gaatgagaggcatttgatgtc |
435 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
38729292 |
gaatgagaggcatttgatgtc |
38729272 |
T |
|
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