View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_25 (Length: 401)
Name: NF9873_high_25
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 383
Target Start/End: Complemental strand, 44520590 - 44520210
Alignment:
| Q |
6 |
gtttcgtgttgcaactattgctcctaagatctataaaacaaataataataaacattttcaatacgacacatttcattcaagatttgaaagatgcatatga |
105 |
Q |
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| T |
44520590 |
gtttcgtggtgcaactattgctcctaagatctataaaacaaataataataaacattttcaatacgacacatttcattcaagatttgaaagatgcatatga |
44520491 |
T |
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| Q |
106 |
cagaaatttgcttaaaatctggtagatttcatacactcttagtgcttaccctcaaagtgatcttagatcgacacggtccgccaatgtcaattggactgac |
205 |
Q |
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| T |
44520490 |
cagaaatttgcttaaaatctggtagatttcatacactcttagtgcttaccctcaaagtgatcttagatcgacacggtccgccaatgtcaattggagtgac |
44520391 |
T |
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| Q |
206 |
aagaaaagttttttgatatggaaaaacaatattgatgaatccagagagagaacaagcaatttcccaaaccttcaagaaggcctgaaaagatagatagaaa |
305 |
Q |
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| T |
44520390 |
aagaaaagttttttgatatggaaaaacaatattgatgaatccagagagagaacaagcaatttcccaaaccttcaagaaggcctgaaaagatagatagaaa |
44520291 |
T |
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| Q |
306 |
agttaacaacctgtttatc---aatatatcatggtaataaattatcattgatgaagattctaaaatttacttatcctatat |
383 |
Q |
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| T |
44520290 |
agttaacaacctgtttatcaataatatatcatggtaacaaattatcattgatgaagattctaaaatttacttatcctatat |
44520210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 52 - 296
Target Start/End: Original strand, 46961023 - 46961267
Alignment:
| Q |
52 |
aataaacattttcaatacgacacatttcattcaagatttgaaagatgcatatgacagaaatttgcttaaaatctggtagatttcatacactcttagtgct |
151 |
Q |
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| T |
46961023 |
aataaatattttccaaaagatacacttcattcaggaattgaaagatgcatacgacagaaacttgtttaaaatcacagagattttacacgctcttggtgct |
46961122 |
T |
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| Q |
152 |
taccctcaaagtgatcttagatcgacacggtccgccaatgtcaattggactgacaagaaaagttttttgatatggaaaaacaatattgatgaatccagag |
251 |
Q |
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| T |
46961123 |
taccctcaaagtgatctttgatcgacacggaccaccaatgtcaattggatggacaagaaaagttttcccatatggaaaaacaacaactataaatccagac |
46961222 |
T |
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| Q |
252 |
agagaacaagcaatttcccaaaccttcaagaaggcctgaaaagat |
296 |
Q |
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| T |
46961223 |
agagaacacgcaattttccaaacctctaggaaggcctgacaagat |
46961267 |
T |
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