View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_29 (Length: 374)
Name: NF9873_high_29
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 67 - 296
Target Start/End: Original strand, 32213474 - 32213703
Alignment:
| Q |
67 |
attataaacaagaacaatcgagtttctatgttcacaacaatttaacaaaataaagcaagaccaatctcttggcttaatgtccagtttatctaatacagca |
166 |
Q |
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| T |
32213474 |
attattaacaagaacaatcgagtttctatgttcacgacaatttaacaaaataaagcaagaccaatctcttggcttaatgtccagtttatctaatacagca |
32213573 |
T |
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| Q |
167 |
ccctaacatattaggtttagttcattatacttaagcttacttggcagttcttgattggttgatgtgtgcatcgcgcaagctggtactcgtgtctaccaaa |
266 |
Q |
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| T |
32213574 |
ccctaacatattaggtttagttcattatacttaagctgacttggcagttcttgattggttgatgtgtgcatcgcgcatgctggtacgcgtgtctaccaaa |
32213673 |
T |
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| Q |
267 |
agtagaaacctttttgatggtgcaatatgt |
296 |
Q |
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| T |
32213674 |
agtagaaacctttttgatggtgcaatatgt |
32213703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 32216311 - 32216384
Alignment:
| Q |
289 |
caatatgtgcgtcacatagagtataatgcacctcgtgcgtgagttttcgtaataagatcttgcatttcatttct |
362 |
Q |
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| T |
32216311 |
caatatgtgcgtcacatagagtataatgcacctcgtgcgtgagttttcgtaaaaagatcttgcatttcatttct |
32216384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32212892 - 32212941
Alignment:
| Q |
1 |
aagtaatgaaaagaataagttggtttctacagggtcgtttaatttctaca |
50 |
Q |
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| T |
32212892 |
aagtaatgaaaagaataagttggtttctacagggtcgtttaatttctaca |
32212941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 32225604 - 32225653
Alignment:
| Q |
311 |
ataatgcacctcgtgcgtgagttttcgtaataagatcttgcatttcattt |
360 |
Q |
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| T |
32225604 |
ataatgcacctcgtgcgttagttttcgtaaaaagatcttgcatttcattt |
32225653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 25228235 - 25228291
Alignment:
| Q |
86 |
gagtttctatgttcacaacaatttaacaaaataaagcaagaccaatctcttggcttaa |
143 |
Q |
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| T |
25228235 |
gagtttctatgt-cacgacaatttaacaaaatagatcaagaccaatgtcttggcttaa |
25228291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 19995942 - 19996004
Alignment:
| Q |
110 |
aacaaaataaagcaagaccaatctcttggcttaatgtccagtttatctaatacagcaccctaa |
172 |
Q |
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| T |
19995942 |
aacaaaataaatcaagaccaatttcttggttgaatgtcctatttatctaatatagaaccctaa |
19996004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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