View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_high_30 (Length: 371)

Name: NF9873_high_30
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_high_30
NF9873_high_30
[»] chr6 (6 HSPs)
chr6 (176-364)||(20770444-20770632)
chr6 (19-103)||(20770365-20770449)
chr6 (235-308)||(6921494-6921567)
chr6 (234-308)||(6954663-6954737)
chr6 (235-308)||(6943098-6943171)
chr6 (238-349)||(6947983-6948094)
[»] chr7 (3 HSPs)
chr7 (156-305)||(14076469-14076618)
chr7 (156-305)||(14386497-14386646)
chr7 (71-103)||(29873906-29873938)
[»] chr5 (1 HSPs)
chr5 (181-307)||(18964978-18965104)
[»] scaffold0097 (1 HSPs)
scaffold0097 (235-295)||(16529-16589)
[»] chr2 (1 HSPs)
chr2 (235-295)||(20712690-20712750)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 176 - 364
Target Start/End: Original strand, 20770444 - 20770632
Alignment:
Q  176 tatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttgatttggcgaaagagacatac 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20770444 tatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagcaatttgtgatcatctcccttgatttggcgaaagagacatac 20770543  T
Q  276 aaacagttgttactccctcaatgttgtgatgaatttccacttgataatcaaactcttcgtgtgttgatggattgtatttgttcttctca 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  20770544 aaacagttgttactccctcaatgttgtgatgaatttccacttgataatcaaactctttgtgtgttgatggattgtatttgtttttctca 20770632  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 20770365 - 20770449
Alignment:
Q  19 cacacatactggaaatcattacagccgattccatgcccgttactgctgtgggattgttggttcgtgcaatggattgatctgtttg 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  20770365 cacacgtactggaaatcattacagccgattccatgcccgttactgttgtgggattgttggttcgtgcaatggattgatctatttg 20770449  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 6921567 - 6921494
Alignment:
Q  235 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaa 308  Q
    |||||||||| ||||| |||||||||| || ||||||||| | ||| ||||| ||||||| |||||||||||||    
T  6921567 aatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaa 6921494  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 6954737 - 6954663
Alignment:
Q  234 aaatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaa 308  Q
    ||||||||||||||||| |||||| ||  || ||||||||| | ||||||||| ||||| | |||||||||||||    
T  6954737 aaatttgtgatcatctcacttgatatgaggacagagacatatacacagttgttgctcccccgatgttgtgatgaa 6954663  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 6943171 - 6943098
Alignment:
Q  235 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaa 308  Q
    |||| ||||| ||||| |||||||||| || ||||||||| | | | ||||| |||||||||||||||||||||    
T  6943171 aattcgtgatgatctcacttgatttggggacagagacatatacaaaattgttgctccctcaatgttgtgatgaa 6943098  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 349
Target Start/End: Complemental strand, 6948094 - 6947983
Alignment:
Q  238 ttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaatttccacttgataatcaaactcttcgtgt 337  Q
    ||||||| ||||| |||||||||| || ||||| ||| | || |||||| ||||||| |||||||||||||   | || ||||  || |||||||  |||    
T  6948094 ttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcgatgttgtgatgaagagctacatgatgttccaactctttctgt 6947995  T
Q  338 gttgatggattg 349  Q
    ||||||||||||    
T  6947994 gttgatggattg 6947983  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 305
Target Start/End: Original strand, 14076469 - 14076618
Alignment:
Q  156 ggtgtatatttaagtaatagtatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttg 255  Q
    ||||| ||||| ||||||||| |  ||||||||||| |||| |||||||  |||| |  ||||||||| |  ||  || |||||||||| ||||| ||||    
T  14076469 ggtgtgtatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttg 14076568  T
Q  256 atttggcgaaagagacatacaaacagttgttactccctcaatgttgtgat 305  Q
    |||||| ||  |||||||| | ||| ||||||||||||| ||||||||||    
T  14076569 atttggggactgagacatatacacaattgttactccctccatgttgtgat 14076618  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 305
Target Start/End: Original strand, 14386497 - 14386646
Alignment:
Q  156 ggtgtatatttaagtaatagtatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttg 255  Q
    ||||| ||||| ||||||||| |  ||||||||||| |||| |||||||  |||| |  ||||||||| |  ||  || |||||||||| ||||| ||||    
T  14386497 ggtgtgtatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttg 14386596  T
Q  256 atttggcgaaagagacatacaaacagttgttactccctcaatgttgtgat 305  Q
    |||||| ||  |||||||| | ||| ||||||||||||| ||||||||||    
T  14386597 atttggggactgagacatatacacaattgttactccctccatgttgtgat 14386646  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 29873906 - 29873938
Alignment:
Q  71 attgttggttcgtgcaatggattgatctgtttg 103  Q
    ||||||||||| |||||||||||||||||||||    
T  29873906 attgttggttcctgcaatggattgatctgtttg 29873938  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 307
Target Start/End: Complemental strand, 18965104 - 18964978
Alignment:
Q  181 gttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttgatttggcgaaagagacatacaaaca 280  Q
    ||||||||||| |||| ||||||||||||| ||| || | ||||   ||  || |||||||||| ||||| |||||| ||| ||  |||||||  | |||    
T  18965104 gttggttggtccgtcaccgttataattgtcatcaaaagattctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacaca 18965005  T
Q  281 gttgttactccctcaatgttgtgatga 307  Q
    |||||||||||||| ||||||||||||    
T  18965004 gttgttactccctccatgttgtgatga 18964978  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 16589 - 16529
Alignment:
Q  235 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctca 295  Q
    ||||||||||||||||||| ||||||| ||  |||||||||| |||  |||| ||||||||    
T  16589 aatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctca 16529  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 20712750 - 20712690
Alignment:
Q  235 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctca 295  Q
    ||||||||||||||||||| ||||||| ||  |||||||||| |||  |||| ||||||||    
T  20712750 aatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctca 20712690  T

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