View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_high_33 (Length: 360)

Name: NF9873_high_33
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_high_33
NF9873_high_33
[»] chr4 (2 HSPs)
chr4 (21-187)||(5230687-5230855)
chr4 (65-103)||(43061682-43061720)
[»] chr2 (3 HSPs)
chr2 (270-343)||(27147025-27147098)
chr2 (215-252)||(23059252-23059289)
chr2 (200-252)||(44176721-44176773)
[»] chr8 (4 HSPs)
chr8 (185-252)||(8056859-8056926)
chr8 (185-252)||(17137272-17137339)
chr8 (201-252)||(443678-443729)
chr8 (35-101)||(11556955-11557021)
[»] chr7 (2 HSPs)
chr7 (185-252)||(6936318-6936385)
chr7 (186-252)||(35574989-35575055)
[»] chr1 (2 HSPs)
chr1 (185-252)||(11562462-11562529)
chr1 (186-252)||(15103544-15103610)
[»] chr5 (3 HSPs)
chr5 (186-252)||(18626225-18626291)
chr5 (51-103)||(18542220-18542272)
chr5 (51-103)||(26208015-26208067)
[»] chr3 (3 HSPs)
chr3 (202-252)||(16310987-16311037)
chr3 (202-252)||(18487771-18487821)
chr3 (202-252)||(18491981-18492031)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 5230855 - 5230687
Alignment:
Q  21 gacacagccaccagacacaacacttacatgtcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgttacatgtcggatacaag 120  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  5230855 gacacagccaccggacacaacacttacatgtcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgttacgtgtcagatacaag 5230756  T
Q  121 atgcacctttggtccgaactccaaagtattggtgcggc--atagaagatgaataaaatgaacatgagtt 187  Q
    || ||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||    
T  5230755 atacacctttggtccgaactccaaagtattggtgcgacatatagaagatgaataaaatgaacatgagtt 5230687  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 43061720 - 43061682
Alignment:
Q  65 aatttgagaaaatataactaattgaatgtaaccacatgt 103  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  43061720 aatttgagaaaatataaataattgaatgtaacaacatgt 43061682  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 27147098 - 27147025
Alignment:
Q  270 tcaaaacaccttaagcaccttgaagaaaagatgataattttgccaccttgtattacaacaccaatatgaagtct 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27147098 tcaaaacaccttaagcaccttgaagaaaagatgataattttgccaccttctattacaacaccaatatgaagtct 27147025  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 23059252 - 23059289
Alignment:
Q  215 aggcttctcctggcttttatttgaatttctagctttat 252  Q
    |||||||||||| |||||||||||||||||||||||||    
T  23059252 aggcttctcctgacttttatttgaatttctagctttat 23059289  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 44176721 - 44176773
Alignment:
Q  200 gtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 252  Q
    ||||||||| ||||||||| || ||||||||||  ||||||||||||||||||    
T  44176721 gtttgtatgaggttcaggcatcacctggctttttattgaatttctagctttat 44176773  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 8056859 - 8056926
Alignment:
Q  185 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 252  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  8056859 gttttgtttgaattggtttgtatgcggttcaggcttctcctggcttttatttgattttctagctttat 8056926  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 17137272 - 17137339
Alignment:
Q  185 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 252  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  17137272 gttttgtttgaattggtttgtatgcggttcaggcttctcctggcttttatttgattttctagctttat 17137339  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 443678 - 443729
Alignment:
Q  201 tttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 252  Q
    |||| ||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  443678 tttgcatgcggttcaggcttctcctgtcttttatttgaatttatagctttat 443729  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 11557021 - 11556955
Alignment:
Q  35 acacaacacttacatgtcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacat 101  Q
    |||||||||| |||||| || |||  ||| ||||||||||||| ||| | |||||||||||||||||    
T  11557021 acacaacactaacatgtagacacctgtaataatttgagaaaatttaagtgattgaatgtaaccacat 11556955  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 6936385 - 6936318
Alignment:
Q  185 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 252  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  6936385 gttttgtttgaattggtttgtatgcggttcaggcttctcctgacttttatttgattttctagctttat 6936318  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 35575055 - 35574989
Alignment:
Q  186 ttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 252  Q
    ||||| ||||| || ||||||||  |||| ||| ||||||| ||||||||| |||||||||||||||    
T  35575055 ttttgcttgaactgttttgtatgcagttcgggcctctcctgacttttatttaaatttctagctttat 35574989  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 11562529 - 11562462
Alignment:
Q  185 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 252  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  11562529 gttttgtttgaattggtttgtatgcggttcaggcttctcctgacttttatttgaatttctagcgttat 11562462  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 15103544 - 15103610
Alignment:
Q  186 ttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 252  Q
    ||||| |||||||| ||| |||| |||||||||||||| || ||||||| |||| ||||||||||||    
T  15103544 ttttgcttgaattgttttatatgcggttcaggcttctcatgacttttatgtgaacttctagctttat 15103610  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 18626291 - 18626225
Alignment:
Q  186 ttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 252  Q
    ||||| |||||||| |||||||| ||||||||||||||| | ||||||||| |||||||||||||||    
T  18626291 ttttgcttgaattgttttgtatgcggttcaggcttctccggacttttatttaaatttctagctttat 18626225  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 18542272 - 18542220
Alignment:
Q  51 tcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgt 103  Q
    |||| |||| ||| |||||||||||||| || ||||||||||||| |||||||    
T  18542272 tcgacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatgt 18542220  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 26208067 - 26208015
Alignment:
Q  51 tcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgt 103  Q
    ||||||| ||||| |||||||||||||| || |  ||||||||||||||||||    
T  26208067 tcgatactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgt 26208015  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 16310987 - 16311037
Alignment:
Q  202 ttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 252  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  16310987 ttgtatggggttcaagcttctcctggcttttatttgaatttctagccttat 16311037  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 18487771 - 18487821
Alignment:
Q  202 ttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 252  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  18487771 ttgtatggggttcaagcttctcctggcttttatttgaatttctagccttat 18487821  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 18491981 - 18492031
Alignment:
Q  202 ttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 252  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  18491981 ttgtatggggttcaagcttctcctggcttttatttgaatttctagccttat 18492031  T

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