View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_35 (Length: 352)
Name: NF9873_high_35
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 52918047 - 52918388
Alignment:
| Q |
18 |
acacatgatttctctaaacaaactcaatacatgaaccaatgttcctaaaacagctcctggaactatgacatcccaaccttgagaaccaagcgtacttctc |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52918047 |
acacatgatttctctaaacacactcaatacatgaaccaatgttcctaaaacagctcctggaactatgacatcccaaccttgagaaccaagcgtacttctc |
52918146 |
T |
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| Q |
118 |
acagcttttagaagaagagtacttagttttgaaacctgaaaaattacactaaaaatttacagtagggaagttagaaaacatacaagtt------------ |
205 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52918147 |
acagcttttagaagaagagtacatagttttgaaacctgaaaaattacactaaaaatttacagtagtgaagttagaaaacatacaagttatgtttatcata |
52918246 |
T |
|
| Q |
206 |
atgaaatccacagtgtaggaataaagaagacaagaaatcggagatactgttgaaaacactacatattaaaaatcttttaaatctcctattattaaaattt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
52918247 |
atgaaatccacagtgtaggaataaagaagacaagaaatcggagatactgttgaaaacactacatattaaaagtcctttaaatctcctattattaaaattt |
52918346 |
T |
|
| Q |
306 |
aaggaaaatgcattatcatacccagcacgaatctctgcttct |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52918347 |
aaggaaaatgcattatcatacccagcacgaatctccgcttct |
52918388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 35229778 - 35230119
Alignment:
| Q |
18 |
acacatgatttctctaaacaaactcaatacatgaaccaatgttcctaaaacagctcctggaactatgacatcccaaccttgagaaccaagcgtacttctc |
117 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35229778 |
acacatgatttctctaaacacactcaatacctgaaccaatgttcctaaaacagctcctggaactatgacatcccaaccttgagaaccaagcgtacttctc |
35229877 |
T |
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| Q |
118 |
acagcttttagaagaagagtacttagttttgaaacctgaaaaattacactaaaaatttacagtagggaagttagaaaacatacaagtt------------ |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35229878 |
acagcttttagaagaagagtacatagttttgaaacctgaaaaattacactaaaaatttacagtagcgaagttagaaaacatacaagttatgtttatcata |
35229977 |
T |
|
| Q |
206 |
atgaaatccacagtgtaggaataaagaagacaagaaatcggagatactgttgaaaacactacatattaaaaatcttttaaatctcctattattaaaattt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
35229978 |
atgaaatccacagtgtaggaataaagaagacaagaaatcggagatactgttgaaaacactacatattaaaattcctttaaatctcctattattaaaattt |
35230077 |
T |
|
| Q |
306 |
aaggaaaatgcattatcatacccagcacgaatctctgcttct |
347 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
35230078 |
aaggataatgcattatcatacccagcacgaatctccgcttct |
35230119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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