View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9873_high_40 (Length: 332)
Name: NF9873_high_40
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_40 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 21704629 - 21704315
Alignment:
| Q |
19 |
aaaatgcatggaaactagaaccgggatttgattatatggtaaatgagtgtttgcaaactacttcagaagatgatatcctcccacgtcaaca-acgttctg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| | |||||||| |
|
|
| T |
21704629 |
aaaatgcatggaaactagaaccgggatttgattatatggtaaatgagtgttggcaaaccacttcagaagatgatatcctcccgcgtcaaaagacgttctg |
21704530 |
T |
|
| Q |
118 |
ctgaggagatggtagtgtggagtagaaatcattgtaataagctgaaaattgaaattgaggaatgtcgtcgtgaattaaatcttgcacgcattagccgcac |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
21704529 |
ctggggagatggtagtgtggagtagaaatcattgtaataagcggaaaattgaaattgaggaatgtcgtcgtgaattgaatcttgcacgcattagtcgcac |
21704430 |
T |
|
| Q |
218 |
tggtgatgagcaaaagttgttgtcactgttacacaagcgcatgcataggttgctggtttaggatgatgcttattggagacaatgagcaaaggcacgctgg |
317 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21704429 |
tggtgatgagcaaaagcagttggcactgttacacaagcgcatgcataggttgctggctcaagatgatgcttattggagacaatgagcaaaggcacactgg |
21704330 |
T |
|
| Q |
318 |
tataaggatggtgac |
332 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
21704329 |
tataaggatggtgac |
21704315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 18207127 - 18207440
Alignment:
| Q |
19 |
aaaatgcatggaaactagaaccgggatttgattatatggtaaatgagtgtttgcaaactacttcagaagatgatatcctcccacgtcaacaacgttctgc |
118 |
Q |
| |
|
||||||| ||||||||||||||||| ||| | | ||||| || ||||||| ||| || |||||||| | | | || || |||||||| |||| ||| |
|
|
| T |
18207127 |
aaaatgcttggaaactagaaccggggtttaacgaaatggttaaagagtgttggcatacatattcagaagcttttctacttccgcgtcaacatcgttgtgc |
18207226 |
T |
|
| Q |
119 |
tgaggagatggtagtgtggagtagaaatcattgtaataagctgaaaattgaaattgaggaatgtcgtcgtgaattaaatcttgcacgcattagccgcact |
218 |
Q |
| |
|
||||||||||||| |||||||| | || ||||||| || ||||| ||||||| || |||||||| ||| |||||||||||||||||| |||| |||| |
|
|
| T |
18207227 |
agaggagatggtagagtggagtaaacataattgtaaaaaattgaaacttgaaatagaagaatgtcgccgtaaattaaatcttgcacgcagtagctgcacc |
18207326 |
T |
|
| Q |
219 |
ggtgatgagcaaaagttgttgtcactgttacacaagcgcatgcataggttgctggtttaggatgatgcttattggagacaatgagcaaaggcacgctggt |
318 |
Q |
| |
|
|||| ||||| | || | |||||||| || ||| |||||||| ||| |||||||||| |||||||||||| |||||||| ||| | || |
|
|
| T |
18207327 |
agtgaagagcagcttcaactaacagtcttacacaaacgtatgaataggttgttggcacaggatgatgcatattggagacaacgagcaaagacacattagt |
18207426 |
T |
|
| Q |
319 |
ataaggatggtgac |
332 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18207427 |
ataaggatggtgac |
18207440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University