View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_high_44 (Length: 306)

Name: NF9873_high_44
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_high_44
NF9873_high_44
[»] chr8 (3 HSPs)
chr8 (163-288)||(39067888-39068013)
chr8 (163-193)||(41361653-41361683)
chr8 (165-193)||(9501516-9501544)
[»] chr5 (3 HSPs)
chr5 (19-132)||(2273512-2273625)
chr5 (163-212)||(39531565-39531614)
chr5 (163-213)||(32347881-32347931)
[»] chr4 (8 HSPs)
chr4 (160-214)||(20400067-20400121)
chr4 (163-217)||(25658067-25658121)
chr4 (163-215)||(22757001-22757051)
chr4 (162-193)||(7084126-7084157)
chr4 (163-193)||(478172-478202)
chr4 (163-212)||(7083979-7084028)
chr4 (163-195)||(30201945-30201977)
chr4 (164-217)||(51152025-51152080)
[»] chr7 (8 HSPs)
chr7 (163-212)||(21990572-21990621)
chr7 (165-213)||(11832922-11832970)
chr7 (164-212)||(46026209-46026257)
chr7 (162-193)||(9785242-9785273)
chr7 (163-193)||(6667320-6667350)
chr7 (163-193)||(21603378-21603408)
chr7 (161-193)||(2622497-2622529)
chr7 (163-211)||(43847039-43847087)
[»] chr6 (2 HSPs)
chr6 (163-212)||(1302636-1302685)
chr6 (163-193)||(6420025-6420055)
[»] chr2 (7 HSPs)
chr2 (163-211)||(12704596-12704644)
chr2 (163-193)||(36867935-36867965)
chr2 (165-210)||(5754198-5754243)
chr2 (164-193)||(7640501-7640530)
chr2 (163-208)||(12891259-12891304)
chr2 (163-215)||(20561294-20561344)
chr2 (163-211)||(22597042-22597090)
[»] chr3 (3 HSPs)
chr3 (160-215)||(38527165-38527220)
chr3 (163-193)||(11818991-11819021)
chr3 (160-210)||(49628266-49628316)
[»] chr1 (3 HSPs)
chr1 (163-193)||(28678306-28678336)
chr1 (160-193)||(33487197-33487230)
chr1 (164-193)||(37825486-37825515)
[»] scaffold0056 (1 HSPs)
scaffold0056 (163-192)||(74095-74124)


Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 39067888 - 39068013
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggggagttaaatttagcttgcttaaattttttcggcagaaaggtttttctatt 262  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39067888 ggtgacggctagggtttgagaagaagagaagtgagataggaagaaagggggagttaaatttagcttgcttaaattttttcggcagaaaggtttttctatt 39067987  T
Q  263 tatttatctaaatgacatcaaccttc 288  Q
    ||||||||||||||||||||||||||    
T  39067988 tatttatctaaatgacatcaaccttc 39068013  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 41361683 - 41361653
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaag 193  Q
    |||||||||||||||||||||||||||||||    
T  41361683 ggtgacggctagggtttgagaaggagagaag 41361653  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 9501544 - 9501516
Alignment:
Q  165 tgacggctagggtttgagaaggagagaag 193  Q
    |||||||||||||||||||||||||||||    
T  9501544 tgacggctagggtttgagaaggagagaag 9501516  T

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Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 2273512 - 2273625
Alignment:
Q  19 ctagtgccagtgatactgcttgaaaggtcggatttcttattgcccgacttgaaaactgaacgaataaaattctgaaaagaacgagaaatcttgtacgact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2273512 ctagtgccagtgatactgcttgaaaggtcggatttcttattgcccgacttgaaaactgaacgaataaaattctgaaaagaacgagaaatcttgtacgact 2273611  T
Q  119 tctttgacataacc 132  Q
    ||||||||||||||    
T  2273612 tctttgacataacc 2273625  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 39531565 - 39531614
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggg 212  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  39531565 ggtgacggctagggtttgagaaggagagaagagggagaggaagaaagggg 39531614  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 32347881 - 32347931
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaaggggg 213  Q
    |||||||||||||||||||  |||||||||| | || ||||||||||||||    
T  32347881 ggtgacggctagggtttgatgaggagagaagagagagaggaagaaaggggg 32347931  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 20400067 - 20400121
Alignment:
Q  160 aaaggtgacggctagggtttgagaaggagagaagtgggataggaagaaaggggga 214  Q
    |||||||||  ||||||||||||||||||||||| | ||||||||||||||||||    
T  20400067 aaaggtgacaactagggtttgagaaggagagaagagagataggaagaaaggggga 20400121  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 25658121 - 25658067
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggggagtt 217  Q
    |||||||||||||||||||||||||||||||   || ||||||||||||||||||    
T  25658121 ggtgacggctagggtttgagaaggagagaagatagagaggaagaaagggggagtt 25658067  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 22757051 - 22757001
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggggag 215  Q
    ||||||||||||||||||||||||||||||  | || ||||||||||||||||    
T  22757051 ggtgacggctagggtttgagaaggagagaa--gagagaggaagaaagggggag 22757001  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 193
Target Start/End: Complemental strand, 7084157 - 7084126
Alignment:
Q  162 aggtgacggctagggtttgagaaggagagaag 193  Q
    ||||||||||||||||||||||||||||||||    
T  7084157 aggtgacggctagggtttgagaaggagagaag 7084126  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Original strand, 478172 - 478202
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaag 193  Q
    |||||||||||||||||||||||||||||||    
T  478172 ggtgacggctagggtttgagaaggagagaag 478202  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 7083979 - 7084028
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggg 212  Q
    ||||||| ||||||||||||||||||| ||| | || |||||||||||||    
T  7083979 ggtgacgactagggtttgagaaggagaaaagagagagaggaagaaagggg 7084028  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 30201977 - 30201945
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtg 195  Q
    |||||||||||||||||||||||||||| ||||    
T  30201977 ggtgacggctagggtttgagaaggagaggagtg 30201945  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 51152080 - 51152025
Alignment:
Q  164 gtgacggctagggtttgagaaggagaga--agtgggataggaagaaagggggagtt 217  Q
    |||||||||||| |||||||||||||||  || | || ||||||||||||||||||    
T  51152080 gtgacggctaggttttgagaaggagagaagagagagagaggaagaaagggggagtt 51152025  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 21990621 - 21990572
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggg 212  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||    
T  21990621 ggtgacggctagggtttgagaaggagagaagagagagaggaagaaagggg 21990572  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 11832970 - 11832922
Alignment:
Q  165 tgacggctagggtttgagaaggagagaagtgggataggaagaaaggggg 213  Q
    ||||||||||||||||||||||||||||| | || ||||||||||||||    
T  11832970 tgacggctagggtttgagaaggagagaagagagaaaggaagaaaggggg 11832922  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 46026209 - 46026257
Alignment:
Q  164 gtgacggctagggtttgagaaggagagaagtgggataggaagaaagggg 212  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||    
T  46026209 gtgacggctagggtttgagaaggagagaagagagagaggaagaaagggg 46026257  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 193
Target Start/End: Complemental strand, 9785273 - 9785242
Alignment:
Q  162 aggtgacggctagggtttgagaaggagagaag 193  Q
    ||||||||||||||||||||||||||||||||    
T  9785273 aggtgacggctagggtttgagaaggagagaag 9785242  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 6667350 - 6667320
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaag 193  Q
    |||||||||||||||||||||||||||||||    
T  6667350 ggtgacggctagggtttgagaaggagagaag 6667320  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 21603408 - 21603378
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaag 193  Q
    |||||||||||||||||||||||||||||||    
T  21603408 ggtgacggctagggtttgagaaggagagaag 21603378  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 2622529 - 2622497
Alignment:
Q  161 aaggtgacggctagggtttgagaaggagagaag 193  Q
    ||||||||||| |||||||||||||||||||||    
T  2622529 aaggtgacggcaagggtttgagaaggagagaag 2622497  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 43847087 - 43847039
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaaggg 211  Q
    |||||| ||||||||||||||| |||||||| | || ||||||||||||    
T  43847087 ggtgacagctagggtttgagaatgagagaagagagagaggaagaaaggg 43847039  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 1302685 - 1302636
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggg 212  Q
    ||||||||||||||||||||||||||| ||| | || |||||||||||||    
T  1302685 ggtgacggctagggtttgagaaggagaaaagagagagaggaagaaagggg 1302636  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Original strand, 6420025 - 6420055
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaag 193  Q
    |||||||||||||||||||||||||||||||    
T  6420025 ggtgacggctagggtttgagaaggagagaag 6420055  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 12704644 - 12704596
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaaggg 211  Q
    ||||||| ||||||||||||||||||||||| | || ||||||||||||    
T  12704644 ggtgacgactagggtttgagaaggagagaagagagagaggaagaaaggg 12704596  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 36867965 - 36867935
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaag 193  Q
    |||||||||||||||||||||||||||||||    
T  36867965 ggtgacggctagggtttgagaaggagagaag 36867935  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 5754243 - 5754198
Alignment:
Q  165 tgacggctagggtttgagaaggagagaagtgggataggaagaaagg 210  Q
    |||||||||||||||||||| |||||||| | || |||||||||||    
T  5754243 tgacggctagggtttgagaatgagagaagagagagaggaagaaagg 5754198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 193
Target Start/End: Original strand, 7640501 - 7640530
Alignment:
Q  164 gtgacggctagggtttgagaaggagagaag 193  Q
    ||||||||||||||||||||||||||||||    
T  7640501 gtgacggctagggtttgagaaggagagaag 7640530  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 12891259 - 12891304
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaa 208  Q
    ||||||| ||||||||||||||||||||||| | || |||||||||    
T  12891259 ggtgacgactagggtttgagaaggagagaagagagagaggaagaaa 12891304  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 20561294 - 20561344
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggggag 215  Q
    |||||||||||||||||||||||||| |||  | || ||||||||||||||||    
T  20561294 ggtgacggctagggtttgagaaggagggaa--gagagaggaagaaagggggag 20561344  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 22597090 - 22597042
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaaggg 211  Q
    ||||||| ||||||||||||||||||||||| | || || |||||||||    
T  22597090 ggtgacgactagggtttgagaaggagagaagagagagagaaagaaaggg 22597042  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 38527220 - 38527165
Alignment:
Q  160 aaaggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggggag 215  Q
    |||||||||||| |||||||||||| |||||||| |  | ||||||||||||||||    
T  38527220 aaaggtgacggccagggtttgagaacgagagaagagaaagaggaagaaagggggag 38527165  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 11819021 - 11818991
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaag 193  Q
    |||||||||||||||||||||||||||||||    
T  11819021 ggtgacggctagggtttgagaaggagagaag 11818991  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 49628266 - 49628316
Alignment:
Q  160 aaaggtgacggctagggtttgagaaggagagaagtgggataggaagaaagg 210  Q
    ||||||||| ||||||||||||||| |||||||| | || |||||||||||    
T  49628266 aaaggtgacagctagggtttgagaatgagagaagagagagaggaagaaagg 49628316  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Original strand, 28678306 - 28678336
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaag 193  Q
    |||||||||||||||||||||||||||||||    
T  28678306 ggtgacggctagggtttgagaaggagagaag 28678336  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 33487197 - 33487230
Alignment:
Q  160 aaaggtgacggctagggtttgagaaggagagaag 193  Q
    |||||||||||||||| |||||||||||||||||    
T  33487197 aaaggtgacggctaggatttgagaaggagagaag 33487230  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 193
Target Start/End: Original strand, 37825486 - 37825515
Alignment:
Q  164 gtgacggctagggtttgagaaggagagaag 193  Q
    ||||||||||||||||||||||||||||||    
T  37825486 gtgacggctagggtttgagaaggagagaag 37825515  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 192
Target Start/End: Complemental strand, 74124 - 74095
Alignment:
Q  163 ggtgacggctagggtttgagaaggagagaa 192  Q
    ||||||||||||||||||||||||||||||    
T  74124 ggtgacggctagggtttgagaaggagagaa 74095  T

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