View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9873_high_50 (Length: 279)
Name: NF9873_high_50
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_50 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 31330505 - 31330746
Alignment:
| Q |
22 |
agagaattgaagtttgtgttgtattttgagctagaggcaagcttgagcaagattaaggcaagacaccaagagctagggtttggcttggcaagaagataga |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31330505 |
agagaattgaagtttgtgttgtattttgagctagaggcaagcttgagcaagattaaggcaagacaccaagagctagggtttggcttggcaagaagataga |
31330604 |
T |
|
| Q |
122 |
ggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgattattttgagaagaaatttaagttatgttga |
221 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31330605 |
ggcaggggctgaatgttgaaactgaatgtaagtataagtgattaatagcttaaattgaggtaaaagtgattattttgagaagaaatttaagttatgttga |
31330704 |
T |
|
| Q |
222 |
ttcattagaagtataagctgtaatttcatttggcattctgtg |
263 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
31330705 |
ttcattagaagtataagctgttatttcatttggcattctgtg |
31330746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 31337226 - 31337467
Alignment:
| Q |
22 |
agagaattgaagtttgtgttgtattttgagctagaggcaagcttgagcaagattaaggcaagacaccaagagctagggtttggcttggcaagaagataga |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31337226 |
agagaattgaagtttgtgttgtattttgagctagaggcaagcttgagcaagattaaggcaagacaccaagagctagggtttggcttggcaagaagataga |
31337325 |
T |
|
| Q |
122 |
ggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgattattttgagaagaaatttaagttatgttga |
221 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31337326 |
ggcaggggctgaatgttgaaactgaatgtaagtataagtgattaatagcttaaattgaggtaaaagtgattattttgagaagaaatttaagttatgttga |
31337425 |
T |
|
| Q |
222 |
ttcattagaagtataagctgtaatttcatttggcattctgtg |
263 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
31337426 |
ttcattagaagtataagctgttatttcatttggcattctgtg |
31337467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 2694672 - 2694805
Alignment:
| Q |
92 |
agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat |
191 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2694672 |
agctagggtttggcttggcaagaagattgaggcaggggctga-------------atgtaagtataagtgattaatagcttaaattgaggtaaaagtgat |
2694758 |
T |
|
| Q |
192 |
tattttgagaagaaatttaagttatgttgattcattagaagtataag |
238 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| ||||||| |
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|
| T |
2694759 |
tattttgagaagaaattcaagttatgttgattgattagatgtataag |
2694805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 31316352 - 31316273
Alignment:
| Q |
38 |
tgttgtattttgagc--tagaggcaagcttgagcaagattaaggcaagacaccaagagctaggg-tttggcttggcaagaa |
115 |
Q |
| |
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|||||| |||||||| |||||||||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
31316352 |
tgttgtgttttgagcattagaggcaagtttgagcaagattaatgcaagaca-caagagctagggttttggcttggcaagaa |
31316273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 31662625 - 31662756
Alignment:
| Q |
18 |
gtagagagaattgaagtttgtgttgtattttgagctagaggcaagcttgagcaagattaaggcaagacaccaagagctagggtttggcttggcaagaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31662625 |
gtagagagaattgaagtttgtgttgtattttgagctagaggcaagcttgagcaagattaaggcaagacaccaagagctagggtttggcttggcaagaaga |
31662724 |
T |
|
| Q |
118 |
tagaggcaggggctgaatgttgcaactgaatg |
149 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |
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|
| T |
31662725 |
tagaggcaggggctgaatgttgaaactgaatg |
31662756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 5559297 - 5559164
Alignment:
| Q |
92 |
agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat |
191 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5559297 |
agctagggtttggcttggcaagaagattgaggcaggggctgaatgt-------------aagtataagtgattaatagcttaaattgaggtaaaagtgat |
5559211 |
T |
|
| Q |
192 |
tattttgagaagaaatttaagttatgttgattcattagaagtataag |
238 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| ||||||| |
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|
| T |
5559210 |
tattttgagaagaaattcaagttatgttgattgattagatgtataag |
5559164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 34149980 - 34150098
Alignment:
| Q |
53 |
tagaggcaagcttgagcaagattaaggcaagacaccaagagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaa-tgta |
151 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||| | ||| || |||| |||| |
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|
| T |
34149980 |
tagaggcaagcttgagcaagattgaggcaagacaccaagagctagggtttggcttggcaagaagattgagtcaagggatgagtattgaaattgaagtgta |
34150079 |
T |
|
| Q |
152 |
agtataagtgattaatagc |
170 |
Q |
| |
|
|||||||||||| |||||| |
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|
| T |
34150080 |
agtataagtgataaatagc |
34150098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 25637223 - 25637273
Alignment:
| Q |
192 |
tattttgagaagaaatttaagttatgttgattcattagaagtataagctgt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
25637223 |
tattttgagaagaaatttaagttatgttgattaattataagcataagctgt |
25637273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 19357899 - 19358032
Alignment:
| Q |
92 |
agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat |
191 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
19357899 |
agctagggtttggcttggcaagaagattgaggcaggggctga-------------atgtaagtataagtgattaatagcttaaattgaggtaaaagtgat |
19357985 |
T |
|
| Q |
192 |
tattttgagaagaaatttaagttatgttgattcattagaagtataag |
238 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
19357986 |
tattttgagaagaaattcaagttatgttgattgattagatgtataag |
19358032 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 18112802 - 18112715
Alignment:
| Q |
38 |
tgttgtattttgagc--tagaggcaagcttgagcaagattaaggcaagacaccaagagctaggg-tttggcttggcaagaagatagagg |
123 |
Q |
| |
|
|||||| |||||||| |||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
18112802 |
tgttgtgttttgagcattagaggcaagtttgagcaagattaatgcaagaca-caagagctagggttttggcttggcaagaagattgagg |
18112715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 37367646 - 37367779
Alignment:
| Q |
92 |
agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat |
191 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37367646 |
agctagggtttggcttggcaagaagattgaggcaggggctga-------------atgtaagtataagtgattaatagcttaaattgaggtaaaagtgat |
37367732 |
T |
|
| Q |
192 |
tattttgagaagaaatttaagttatgttgattcattagaagtataag |
238 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| |||||| ||||||| |
|
|
| T |
37367733 |
tattttgagaagcaattcaagttatgttgattgattagatgtataag |
37367779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 41529926 - 41529793
Alignment:
| Q |
92 |
agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat |
191 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
41529926 |
agctagggtttggcttggcaagaagattgaggcaggggctgaatgt-------------aagtataagtgattaatagcttaaattgaggtaaaagtgat |
41529840 |
T |
|
| Q |
192 |
tattttgagaagaaatttaagttatgttgattcattagaagtataag |
238 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
41529839 |
tattttgggaagaaattcaagttatgttgattgattagatgtataag |
41529793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 4342727 - 4342653
Alignment:
| Q |
168 |
agcttaaattgaggtgaaagtgattattttgagaagaaatttaagttatgttgattcattagaagtataagctgt |
242 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
4342727 |
agctaaaattgaggtaaaagtgcttattttgagaagaaatttaagttatgttgattaattataagcataagctgt |
4342653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 34455281 - 34455322
Alignment:
| Q |
92 |
agctagggtttggcttggcaagaagatagaggcaggggctga |
133 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||||||| |
|
|
| T |
34455281 |
agctagggtttggcttggcaagaagattgaagcaagggctga |
34455322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 5248687 - 5248795
Alignment:
| Q |
53 |
tagaggcaagcttgagcaagattaaggcaagacaccaagagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaa-tgta |
151 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||||||||| |||||||||||||||||| || || ||| || ||||||| | ||| || |||| |||| |
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|
| T |
5248687 |
tagaggcaagctttagcaagattgagtcaagacaccaagagatagggtttggcttggcaataaaatcgagacaagggctgagtattgaaattgaagtgta |
5248786 |
T |
|
| Q |
152 |
agtataagt |
160 |
Q |
| |
|
||||||||| |
|
|
| T |
5248787 |
agtataagt |
5248795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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