View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_51 (Length: 279)
Name: NF9873_high_51
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_51 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 2340798 - 2340590
Alignment:
| Q |
11 |
gagaagaaagaaaattaggaataatacaataaaacttcattttttactacgacaaaattcatttattattagaaatgctaagggttcaccctcgaaaaat |
110 |
Q |
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| T |
2340798 |
gagaagcaagaaaattacgaataatacaataaaacttcattttttattacgacaaaattcatttattattagaaatgctaagggttcaccctcgaaaaat |
2340699 |
T |
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| Q |
111 |
tcatttatcaattttaaatagagagaatcctaactcatattaaac--acactataataataactttatttttctattaattagtttttggatttgtttat |
208 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2340698 |
tcatttatcaatttgaaatagagagaatcctaactcatattaaacacacactataataataactttatttttctattaattagtttttggatttgtttat |
2340599 |
T |
|
| Q |
209 |
gttgtaggt |
217 |
Q |
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||||||||| |
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| T |
2340598 |
gttgtaggt |
2340590 |
T |
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