View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_52 (Length: 276)
Name: NF9873_high_52
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 42602952 - 42602695
Alignment:
| Q |
1 |
accccaattcccaagtttcttcatttcacatcgaatgagatgttgttgagggcttttgaagggaaagaaagggttcacattattgacttcgacataaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42602952 |
accccaattcccaagtttcttcatttcacatcgaatgagatgttgttgagggcttttgaagggaaagaaagggttcacgttattgacttcgacataaagc |
42602853 |
T |
|
| Q |
101 |
aaggactacaatggcctagcttcttccaaagtttagcatcaagaactaatcctccaagccacgttcgaatcacaggcgtgggggaatcgaagcaagagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42602852 |
aaggactacaatggcctagcttcttccaaagtttagcatcaagaactaatcctccaagccacgttcgaatcacaggcgtgggggaatcgaagcaagagct |
42602753 |
T |
|
| Q |
201 |
gaatgaaactggagacaggcttgctggtttcgctgaggcattgaaccttccctttgat |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42602752 |
gaatgaaactggagacaggcttgctggtttcgctgaggcattgaaccttccctttgat |
42602695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 37498438 - 37498327
Alignment:
| Q |
1 |
accccaattcccaagtttcttcatttcacatcgaatgagatgttgttgagggcttttgaagggaaagaaagggttcacattattgacttcgacataaagc |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37498438 |
accccaatttccaagtttcttcatttcacatcgaatgagatgttgttgacgacttttgaagggaaagaaagggttcacattatcgacttcgacataaagt |
37498339 |
T |
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| Q |
101 |
aaggactacaat |
112 |
Q |
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||| |||||||| |
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| T |
37498338 |
aagtactacaat |
37498327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 37498202 - 37498132
Alignment:
| Q |
147 |
taatcctccaagccacgttcgaatcacaggcgtgggggaatcgaagcaagagctgaatgaaactggagaca |
217 |
Q |
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|||||||||||| || |||| ||||| |||| ||||||||| |||||||||| ||||||| |||||||||| |
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| T |
37498202 |
taatcctccaagtcatgttcaaatcataggcttgggggaattgaagcaagagttgaatgatactggagaca |
37498132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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