View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_high_55 (Length: 265)

Name: NF9873_high_55
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_high_55
NF9873_high_55
[»] chr5 (10 HSPs)
chr5 (20-255)||(30048294-30048529)
chr5 (92-250)||(16597894-16598047)
chr5 (96-255)||(10275516-10275674)
chr5 (78-184)||(12019839-12019945)
chr5 (78-184)||(37659777-37659883)
chr5 (78-184)||(7102875-7102981)
chr5 (78-184)||(16795219-16795325)
chr5 (78-184)||(30696346-30696452)
chr5 (78-184)||(40370748-40370854)
chr5 (99-187)||(15065838-15065926)
[»] chr3 (5 HSPs)
chr3 (64-238)||(22930793-22930968)
chr3 (91-260)||(9698555-9698724)
chr3 (64-255)||(43548694-43548885)
chr3 (96-184)||(21848178-21848266)
chr3 (78-184)||(54170845-54170951)
[»] chr4 (6 HSPs)
chr4 (91-260)||(27187113-27187282)
chr4 (73-255)||(31355658-31355840)
chr4 (78-186)||(43682681-43682789)
chr4 (78-184)||(44148108-44148214)
chr4 (213-258)||(25171114-25171159)
chr4 (212-260)||(50912836-50912884)
[»] chr2 (5 HSPs)
chr2 (98-255)||(13270049-13270206)
chr2 (90-174)||(42515385-42515469)
chr2 (78-184)||(8051942-8052048)
chr2 (78-184)||(36671601-36671707)
chr2 (96-253)||(17256261-17256418)
[»] chr8 (7 HSPs)
chr8 (96-255)||(1287806-1287965)
chr8 (78-184)||(201185-201291)
chr8 (78-184)||(316022-316128)
chr8 (78-184)||(30409304-30409410)
chr8 (78-184)||(43810984-43811090)
chr8 (78-184)||(28647461-28647567)
chr8 (78-184)||(41946366-41946472)
[»] scaffold0044 (1 HSPs)
scaffold0044 (78-184)||(48366-48472)
[»] chr7 (2 HSPs)
chr7 (78-184)||(27757947-27758053)
chr7 (78-184)||(7943584-7943690)
[»] chr6 (6 HSPs)
chr6 (78-184)||(8319005-8319111)
chr6 (78-184)||(17880980-17881086)
chr6 (78-184)||(27571233-27571339)
chr6 (82-184)||(17160643-17160745)
chr6 (78-255)||(21414100-21414277)
chr6 (102-175)||(23254611-23254684)
[»] chr1 (3 HSPs)
chr1 (78-184)||(26312563-26312669)
chr1 (78-184)||(39794945-39795051)
chr1 (194-259)||(25589982-25590047)
[»] scaffold0336 (1 HSPs)
scaffold0336 (212-260)||(386-434)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 30048529 - 30048294
Alignment:
Q  20 ttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048529 ttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatca 30048430  T
Q  120 tattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactct 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30048429 tattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaatgaactct 30048330  T
Q  220 gcatttcttcaattttcaaagtttgcacatcctttg 255  Q
    |||||||||||||||||||||||| |||||||||||    
T  30048329 gcatttcttcaattttcaaagttttcacatcctttg 30048294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 250
Target Start/End: Original strand, 16597894 - 16598047
Alignment:
Q  92 tttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacatt 191  Q
    ||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||           
T  16597894 tttgcctttcttgaaattcttcttatcataaccatctttcttcacagtttgaacttgcaaagcttgttgaatttatctttcactgcttctttc-----cc 16597988  T
Q  192 attaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatc 250  Q
    || |||||| |||| ||||||||||||| || ||||| ||| |||||||||| ||||||    
T  16597989 atcaattcatgtgcttccaaagaactcttcagttcttgaatcttcaaagttttcacatc 16598047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 255
Target Start/End: Complemental strand, 10275674 - 10275516
Alignment:
Q  96 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 195  Q
    ||||||||||| || ||| ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||| ||| ||||||||||  |  || |    
T  10275674 cctttcttgaagttatttctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatcttt-actgcttctttcagttaccatca 10275576  T
Q  196 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 255  Q
    ||||| |||| ||||| |||||||||| ||| ||||| ||||| || | |||||||||||    
T  10275575 attcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 10275516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 12019945 - 12019839
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  12019945 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 12019846  T
Q  178 ttctttc 184  Q
    |||||||    
T  12019845 ttctttc 12019839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 37659883 - 37659777
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  37659883 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 37659784  T
Q  178 ttctttc 184  Q
    |||||||    
T  37659783 ttctttc 37659777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 7102875 - 7102981
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  7102875 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 7102974  T
Q  178 ttctttc 184  Q
    |||||||    
T  7102975 ttctttc 7102981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 16795325 - 16795219
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  16795325 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 16795226  T
Q  178 ttctttc 184  Q
    |||||||    
T  16795225 ttctttc 16795219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 30696452 - 30696346
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  |||||| |||||||||||||| | |    
T  30696452 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgtcgaattgatctttcattgc 30696353  T
Q  178 ttctttc 184  Q
    |||||||    
T  30696352 ttctttc 30696346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 40370748 - 40370854
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||| ||||| | |    
T  40370748 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatttttcattgc 40370847  T
Q  178 ttctttc 184  Q
    |||||||    
T  40370848 ttctttc 40370854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 15065838 - 15065926
Alignment:
Q  99 ttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcaga 187  Q
    |||||||| |||||||||||| | ||||| |||||||  || |||||||| || |||||||||||| || ||||||| ||||| |||||    
T  15065838 ttcttgaagttctttttatcagaatcatctttcttcatggtctgaacttgcaaggcttgttgaattcatatttcactgcttctctcaga 15065926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 22930793 - 22930968
Alignment:
Q  64 tttgaccagtttcg-cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaa 162  Q
    |||||||||||||  ||||| |||||| | |||||||||||||| ||||| ||| || | |||||  | || | |||||||||||| ||   ||||||||    
T  22930793 tttgaccagtttcctcccttggagttattcttgcctttcttgaagttcttcttaacaaaatcatctctattaatagtttgaacttgcaattgttgttgaa 22930892  T
Q  163 ttgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaa 238  Q
    ||||||||||||||||||||||| |||  || |||||| |||||||||||||||| |||| ||||||||| |||||    
T  22930893 ttgatctttcactacttctttcatacaccatcaattcatgtgcctccaaagaactatgcaattcttcaatcttcaa 22930968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 260
Target Start/End: Complemental strand, 9698724 - 9698555
Alignment:
Q  91 ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacat 190  Q
    |||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||||||  |     
T  9698724 ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttac 9698625  T
Q  191 tattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 260  Q
     || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||||| ||||    
T  9698624 catcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattct 9698555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 64 - 255
Target Start/End: Complemental strand, 43548885 - 43548694
Alignment:
Q  64 tttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaat 163  Q
    |||||||||||||  ||||||| ||  | || ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||| ||  |||||||||||    
T  43548885 tttgaccagtttcctccttagaatttttcttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttttagggcttgttgaat 43548786  T
Q  164 tgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 255  Q
    |||||||||||| ||||||||||  |  ||  ||||| |||| || || |||| ||||| ||| ||||| ||||| || | |||||||||||    
T  43548785 tgatctttcactgcttctttcagttaccatcgattcatgtgcttctaatgaacactgcaattcctcaatcttcaatgtcttcacatcctttg 43548694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 21848266 - 21848178
Alignment:
Q  96 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 184  Q
    ||||||||||| ||||| |||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  21848266 cctttcttgaagttcttcttatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 21848178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 54170845 - 54170951
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  54170845 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 54170944  T
Q  178 ttctttc 184  Q
    |||||||    
T  54170945 ttctttc 54170951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 260
Target Start/End: Complemental strand, 27187282 - 27187113
Alignment:
Q  91 ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacat 190  Q
    |||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||||||  |     
T  27187282 ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttac 27187183  T
Q  191 tattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 260  Q
     || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||||| ||||    
T  27187182 catcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattct 27187113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 255
Target Start/End: Complemental strand, 31355840 - 31355658
Alignment:
Q  73 tttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttc 172  Q
    |||| |||||||||||  | || | ||||||||| |||||  ||||||  |||| |||||| | ||||||||||||||  ||||||||||||||||||||    
T  31355840 tttcccccttagagtttttcttccttttcttgaagttcttcctatcattatcatacttcttgatagtttgaacttgtagggcttgttgaattgatctttc 31355741  T
Q  173 actacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 255  Q
    ||| ||| ||||||  |  || |||||| |||| ||||| |||||||||| ||||||||| ||||| || | |||||||||||    
T  31355740 acttcttgtttcagttaccatcaattcatgtgcttccaatgaactctgcaattcttcaatcttcaatgtcttcacatcctttg 31355658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 43682681 - 43682789
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || |||||||| || |||||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| |    
T  43682681 cccttagagtttttcttccctttctttaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgc 43682780  T
Q  178 ttctttcag 186  Q
    |||||||||    
T  43682781 ttctttcag 43682789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 44148214 - 44148108
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  44148214 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 44148115  T
Q  178 ttctttc 184  Q
    |||||||    
T  44148114 ttctttc 44148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 25171159 - 25171114
Alignment:
Q  213 gaactctgcatttcttcaattttcaaagtttgcacatcctttgctt 258  Q
    |||||||||| ||||||||| |||| ||||| ||||||||||||||    
T  25171159 gaactctgcaattcttcaatcttcatagttttcacatcctttgctt 25171114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 50912884 - 50912836
Alignment:
Q  212 agaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 260  Q
    ||||||||||| ||||||||| |||| ||| | ||||||||||||||||    
T  50912884 agaactctgcagttcttcaatcttcatagtcttcacatcctttgcttct 50912836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 13270049 - 13270206
Alignment:
Q  98 tttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaat 197  Q
    ||||||||| || ||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| ||||||||||  |  || |||    
T  13270049 tttcttgaagttattcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgcttctttcagttaccatcaat 13270148  T
Q  198 tcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 255  Q
    ||| |||| || || |||||||||| ||||||||| ||||| || | |||||| ||||    
T  13270149 tcatgtgcttctaatgaactctgcaattcttcaatcttcaatgtcttcacatcttttg 13270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 42515469 - 42515385
Alignment:
Q  90 cttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcac 174  Q
    ||||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||    
T  42515469 ctttttcctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcac 42515385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 8052048 - 8051942
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  8052048 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 8051949  T
Q  178 ttctttc 184  Q
    |||||||    
T  8051948 ttctttc 8051942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 36671707 - 36671601
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  36671707 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 36671608  T
Q  178 ttctttc 184  Q
    |||||||    
T  36671607 ttctttc 36671601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 253
Target Start/End: Complemental strand, 17256418 - 17256261
Alignment:
Q  96 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 195  Q
    ||||||||||| |||||  ||||||| ||||||||  | | |||||||||||| ||| ||||||||||||||||||||   ||||| ||||| |  || |    
T  17256418 cctttcttgaagttcttcctatcataatcatcctttctgatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatca 17256319  T
Q  196 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctt 253  Q
    ||||| | || ||||  ||||| |||| |||| |||| ||||| |||| |||||||||    
T  17256318 attcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatcctt 17256261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 96 - 255
Target Start/End: Complemental strand, 1287965 - 1287806
Alignment:
Q  96 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 195  Q
    ||||||||||| |||||  ||||||  ||||||||||| | |||||||| |||||  ||||||| ||||||||||||||| ||||||||||  |  || |    
T  1287965 cctttcttgaagttcttcctatcattatcatccttcttgatagtttgaatttgtagggcttgttaaattgatctttcactgcttctttcagttaccatca 1287866  T
Q  196 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 255  Q
    ||||| |||| || || |||||||||| ||| ||||| ||||| || | |||||||||||    
T  1287865 attcatgtgcttctaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 1287806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 201185 - 201291
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  201185 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 201284  T
Q  178 ttctttc 184  Q
    |||||||    
T  201285 ttctttc 201291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 316022 - 316128
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  316022 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 316121  T
Q  178 ttctttc 184  Q
    |||||||    
T  316122 ttctttc 316128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 30409304 - 30409410
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  30409304 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 30409403  T
Q  178 ttctttc 184  Q
    |||||||    
T  30409404 ttctttc 30409410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 43810984 - 43811090
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  43810984 cccttagagtttttcttccctttcttgaagttcttcatatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 43811083  T
Q  178 ttctttc 184  Q
    |||||||    
T  43811084 ttctttc 43811090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 28647567 - 28647461
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||| || || | |||||||||||| |  ||||||||||||||||||||| | |    
T  28647567 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcttttttgatagtttgaacttgcatggcttgttgaattgatctttcattgc 28647468  T
Q  178 ttctttc 184  Q
    |||||||    
T  28647467 ttctttc 28647461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 41946472 - 41946366
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || |||||||| || ||||   ||||| | ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  41946472 cccttagagtttttcttccctttcttaaagttctccctatcacaatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcaatgc 41946373  T
Q  178 ttctttc 184  Q
    |||||||    
T  41946372 ttctttc 41946366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 48366 - 48472
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  48366 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 48465  T
Q  178 ttctttc 184  Q
    |||||||    
T  48466 ttctttc 48472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 27758053 - 27757947
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  27758053 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 27757954  T
Q  178 ttctttc 184  Q
    |||||||    
T  27757953 ttctttc 27757947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 7943584 - 7943690
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  7943584 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 7943683  T
Q  178 ttctttc 184  Q
    |||||||    
T  7943684 ttctttc 7943690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 8319005 - 8319111
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  8319005 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 8319104  T
Q  178 ttctttc 184  Q
    |||||||    
T  8319105 ttctttc 8319111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 17880980 - 17881086
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  17880980 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 17881079  T
Q  178 ttctttc 184  Q
    |||||||    
T  17881080 ttctttc 17881086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 27571233 - 27571339
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  27571233 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 27571332  T
Q  178 ttctttc 184  Q
    |||||||    
T  27571333 ttctttc 27571339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 17160745 - 17160643
Alignment:
Q  82 tagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttct 181  Q
    |||||||| | || |||||||||||  | ||  ||||||| ||||||||||| | |||||||||||  || ||||||||||||||||||||||| |||||    
T  17160745 tagagttattcttccctttcttgaatattttcctatcataatcatccttcttgatagtttgaactttcaaggcttgttgaattgatctttcactgcttct 17160646  T
Q  182 ttc 184  Q
    |||    
T  17160645 ttc 17160643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 255
Target Start/End: Original strand, 21414100 - 21414277
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||  |||||||||||   ||||||||||||||  ||||||||| ||||| |||||||      
T  21414100 cccttagagtttttcttccctttcttgaagttcttcctatcattatcatccttcttggtagtttgaacttgtagggcttgttgagttgatttttcactgt 21414199  T
Q  178 ttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 255  Q
    |||||||||  |  || |||||| |||| || || ||||||| || ||| ||||| ||||| || | |||||||||||    
T  21414200 ttctttcagttaccatcaattcatgtgcttctaatgaactcttcaattcctcaatcttcaatgtcttcacatcctttg 21414277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 23254684 - 23254611
Alignment:
Q  102 ttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcact 175  Q
    ||||| |||||| ||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||||||    
T  23254684 ttgaagttctttctatcaaaatcatctttcttcatagtttgaacttgcaaggcttgttgaattgatctttcact 23254611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 26312669 - 26312563
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  26312669 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 26312570  T
Q  178 ttctttc 184  Q
    |||||||    
T  26312569 ttctttc 26312563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 39795051 - 39794945
Alignment:
Q  78 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 177  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  39795051 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 39794952  T
Q  178 ttctttc 184  Q
    |||||||    
T  39794951 ttctttc 39794945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 25589982 - 25590047
Alignment:
Q  194 taattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttc 259  Q
    ||||||| |||| ||||| ||||| |||| ||||||||| |||| |||||  ||||||||||||||    
T  25589982 taattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctttgcttc 25590047  T

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Target: scaffold0336 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 434 - 386
Alignment:
Q  212 agaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 260  Q
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T  434 agaactctgcagttcttcaatcttcatagtcttcacatcctttgcttct 386  T

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