View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9873_high_6 (Length: 538)
Name: NF9873_high_6
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 49 - 526
Target Start/End: Original strand, 7309595 - 7310067
Alignment:
| Q |
49 |
tttgtgaaaagaatccacatttggtacgatttacaatttgttatttttggttataaaacgacaa---tttttaacaataaattacacttatcaaactatc |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7309595 |
tttgtgaaaagaatccacatttggtacgatttacaatttgttatttttggttatagaacaacaacaatttttaacaataaattacacttatcaaactatc |
7309694 |
T |
|
| Q |
146 |
atacattaatgttgcatatgtatatcaatataaagatacgtttaacatcaacagacatcaatnnnnnnnctcataaatagcaatggagttttagctcggg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7309695 |
atacattaatgttgcatatgtatatcaatataaagatacgtttaacataaacagacatcaataaaataactcataaatagcaatggagttttagctcggg |
7309794 |
T |
|
| Q |
246 |
tgaaaataggctctgtaaaattagtacaataaacaaacaagttccaataagctgcaatatttttcttcataacattctgccgccatgttccatcattcat |
345 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7309795 |
tgaaaataggctctataaaattagtacaataaacaaacaagttccaaaaagctgcaatattttgcttcatagcattctgccgccatgttccatcattcat |
7309894 |
T |
|
| Q |
346 |
gcttgtcgcttgatgtgtttgaagctcaggttgtagatctacaattcaaaatgaaccaatttcaacaatagagcgaaattcaaagacgnnnnnnntagga |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7309895 |
-------gcttgatgtgtttgaagctcaggttgtagatctacaattcaaaatgaaccaatttcaacaatagagcgaaattcaaagacg-gtaaaatagga |
7309986 |
T |
|
| Q |
446 |
cagaaacacagtaaatcatgtgaagtgtttcattattctcaagattatagcctgcccacaagttacaaaatgtagtacttg |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
7309987 |
cagaaacacagtaaatcatgtgaagtgtttcattattctcaagattatagcctgccaacaagttacaaaatgtagtgcttg |
7310067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 7332167 - 7332080
Alignment:
| Q |
94 |
tttggttataaaacgacaatttttaacaataaattacacttatcaaactatcatacattaatgttgcatatgtatatcaatataaagata |
183 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7332167 |
tttggttataaaacaacaatttttaacaataaattacacttatcaaattatcatacattaatgttgcata--tatatcaatataaagata |
7332080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 229 - 343
Target Start/End: Complemental strand, 7330181 - 7330063
Alignment:
| Q |
229 |
tggagttttagctcgggtgaaaataggctctgtaaaattagtacaataaacaaacaagtt------ccaataagctgcaatatttttcttcataacattc |
322 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||| |||||||||| |||||||||| |||||||||| ||||||||||||||||| ||||| |
|
|
| T |
7330181 |
tggagttttagctcgggtgaaaatagactat--aaaatgagtacaataaccaaacaagttgtagttccaataagctccaatatttttcttcatagcattc |
7330084 |
T |
|
| Q |
323 |
tgccgccatgttccatcattc |
343 |
Q |
| |
|
|| |||||| |||||||||| |
|
|
| T |
7330083 |
cgcagccatgctccatcattc |
7330063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 496
Target Start/End: Complemental strand, 7330056 - 7329932
Alignment:
| Q |
371 |
tcaggttgtagatctacaattcaaaatgaaccaatttcaacaatagagcgaaattcaaagacgnnnnnnntaggacagaaacac--agtaaatcatgtga |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||| | ||| | ||| ||| ||| ||| |||||| ||||||| |||||| |
|
|
| T |
7330056 |
tcaggttgtagatctacaattcaaaatgaacccatttaaacaatatatcga---tgaaaaacgaaaaaactagaacataaacacaaagtaaatgatgtga |
7329960 |
T |
|
| Q |
469 |
agtgtttcattattctcaagattatagc |
496 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |
|
|
| T |
7329959 |
agtgtttcatcattctcaagtttatagc |
7329932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 7308998 - 7309033
Alignment:
| Q |
11 |
cataggaatggcgggtttatggttttgtagtaaatg |
46 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7308998 |
cataggaaaggcgggtttatggttttgtagtaaatg |
7309033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University