View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_63 (Length: 249)
Name: NF9873_high_63
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_63 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 41679860 - 41680095
Alignment:
| Q |
1 |
aaaaagactatcaagaaaggatgaaatgaacgatggattgcgaaataacctgaaattccaacggctatgccttcaaaaaccgaatgaaaacaaagtgcaa |
100 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41679860 |
aaaaagactacaaagaaaggatgaaataaacgatggattgcgaaataacctgaaattccaacggctatgccttcaaaaaccgaatgaaaacaaagtgcaa |
41679959 |
T |
|
| Q |
101 |
gaataagcaaaatagtatctcccacattagtagtcttcataaatgcaacgttgctctcatccatcgccaactcggtcgttccctcttcttcttgaggtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41679960 |
gaataagcaaaatagtatctcccacattagtagtcttcatgaatgcaacgttgctctcatccatcgccaactcggtcgttccctcttcttcttgaggtgt |
41680059 |
T |
|
| Q |
201 |
tcttcctccttcaagttcctcaactttagcttccct |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
41680060 |
tcttcctccttcaagttcctcaactttagcttccct |
41680095 |
T |
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