View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_high_7 (Length: 522)

Name: NF9873_high_7
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_high_7
NF9873_high_7
[»] chr2 (12 HSPs)
chr2 (295-522)||(30637187-30637420)
chr2 (272-405)||(30635784-30635917)
chr2 (312-401)||(6296858-6296945)
chr2 (277-401)||(10159665-10159786)
chr2 (312-401)||(22845430-22845518)
chr2 (283-400)||(35602629-35602745)
chr2 (277-383)||(30659169-30659271)
chr2 (312-398)||(28856147-28856231)
chr2 (274-343)||(17328443-17328512)
chr2 (275-349)||(19588682-19588755)
chr2 (324-401)||(30629915-30629992)
chr2 (226-269)||(33527724-33527767)
[»] chr6 (7 HSPs)
chr6 (1-173)||(26268467-26268632)
chr6 (277-401)||(2759202-2759327)
chr6 (275-394)||(28963824-28963944)
chr6 (226-274)||(26268336-26268384)
chr6 (276-352)||(15645695-15645771)
chr6 (311-394)||(29157136-29157222)
chr6 (329-393)||(15501673-15501737)
[»] chr8 (13 HSPs)
chr8 (277-401)||(31448811-31448934)
chr8 (277-401)||(43301690-43301813)
chr8 (278-401)||(4237288-4237409)
chr8 (278-401)||(4242027-4242148)
chr8 (312-396)||(8330329-8330411)
chr8 (319-401)||(25361668-25361747)
chr8 (312-401)||(37772777-37772866)
chr8 (277-352)||(18945004-18945079)
chr8 (340-398)||(21959473-21959529)
chr8 (312-401)||(34817682-34817771)
chr8 (322-389)||(14036507-14036572)
chr8 (312-401)||(42973153-42973242)
chr8 (229-269)||(19195946-19195986)
[»] chr3 (11 HSPs)
chr3 (277-401)||(8888941-8889064)
chr3 (277-401)||(8884195-8884318)
chr3 (278-401)||(3673592-3673713)
chr3 (278-394)||(3693646-3693760)
chr3 (278-401)||(8070705-8070824)
chr3 (278-401)||(3034670-3034791)
chr3 (312-401)||(10585128-10585214)
chr3 (312-401)||(631995-632084)
chr3 (323-401)||(45903522-45903598)
chr3 (226-269)||(7578657-7578700)
chr3 (226-269)||(31136872-31136915)
[»] scaffold0182 (1 HSPs)
scaffold0182 (277-401)||(8828-8951)
[»] chr5 (20 HSPs)
chr5 (277-401)||(12044078-12044201)
chr5 (278-401)||(557722-557843)
chr5 (312-401)||(21322983-21323070)
chr5 (277-401)||(32460491-32460614)
chr5 (278-393)||(36941219-36941332)
chr5 (312-401)||(13300432-13300519)
chr5 (280-401)||(41997670-41997790)
chr5 (278-401)||(562494-562613)
chr5 (278-401)||(36936457-36936578)
chr5 (312-401)||(31732612-31732698)
chr5 (280-401)||(42002461-42002581)
chr5 (343-401)||(36949777-36949835)
chr5 (319-401)||(24435126-24435204)
chr5 (277-404)||(3666899-3667023)
chr5 (226-274)||(27813776-27813824)
chr5 (331-399)||(23347857-23347925)
chr5 (314-401)||(8041205-8041286)
chr5 (141-175)||(27813906-27813940)
chr5 (312-400)||(23976383-23976469)
chr5 (332-398)||(2452036-2452101)
[»] chr4 (13 HSPs)
chr4 (277-398)||(41817810-41817930)
chr4 (312-401)||(3992715-3992802)
chr4 (312-401)||(34561468-34561555)
chr4 (325-401)||(7899900-7899973)
chr4 (277-401)||(13520932-13521055)
chr4 (319-401)||(31297472-31297553)
chr4 (312-392)||(39320625-39320703)
chr4 (279-352)||(26187815-26187888)
chr4 (228-271)||(11673492-11673535)
chr4 (226-269)||(55468968-55469011)
chr4 (278-352)||(15799133-15799205)
chr4 (364-401)||(15541600-15541637)
chr4 (369-401)||(36209183-36209215)
[»] chr7 (16 HSPs)
chr7 (312-401)||(27257280-27257367)
chr7 (279-399)||(47102560-47102681)
chr7 (312-401)||(40864343-40864432)
chr7 (277-401)||(9649907-9650030)
chr7 (281-401)||(23866754-23866870)
chr7 (330-401)||(11017025-11017101)
chr7 (277-384)||(19641315-19641421)
chr7 (298-401)||(13343374-13343477)
chr7 (283-352)||(8077029-8077098)
chr7 (277-337)||(1044244-1044304)
chr7 (310-401)||(10499074-10499163)
chr7 (310-401)||(10504103-10504192)
chr7 (365-401)||(18330336-18330372)
chr7 (320-349)||(9010415-9010444)
chr7 (364-401)||(40997790-40997827)
chr7 (326-374)||(11040568-11040616)
[»] scaffold0041 (1 HSPs)
scaffold0041 (312-401)||(34667-34754)
[»] chr1 (11 HSPs)
chr1 (278-401)||(3095115-3095236)
chr1 (319-398)||(40232337-40232415)
chr1 (319-401)||(33055849-33055929)
chr1 (312-397)||(13894310-13894395)
chr1 (312-401)||(41096897-41096982)
chr1 (279-376)||(8273126-8273224)
chr1 (228-269)||(40679192-40679233)
chr1 (226-265)||(34428499-34428538)
chr1 (226-269)||(48921002-48921045)
chr1 (367-401)||(14204512-14204546)
chr1 (319-394)||(23254159-23254236)
[»] scaffold0060 (2 HSPs)
scaffold0060 (312-401)||(51858-51945)
scaffold0060 (320-401)||(46919-46994)
[»] scaffold0061 (1 HSPs)
scaffold0061 (312-401)||(48904-48987)
[»] scaffold0017 (1 HSPs)
scaffold0017 (312-401)||(149647-149730)
[»] scaffold0628 (2 HSPs)
scaffold0628 (277-394)||(7457-7575)
scaffold0628 (334-401)||(5747-5814)
[»] scaffold0070 (2 HSPs)
scaffold0070 (312-401)||(59469-59555)
scaffold0070 (312-401)||(63671-63757)
[»] scaffold0045 (1 HSPs)
scaffold0045 (279-401)||(83929-84056)
[»] scaffold0484 (1 HSPs)
scaffold0484 (319-401)||(7983-8062)
[»] scaffold0015 (1 HSPs)
scaffold0015 (340-398)||(213319-213375)
[»] scaffold0131 (1 HSPs)
scaffold0131 (322-401)||(8622-8700)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 8e-84; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 295 - 522
Target Start/End: Original strand, 30637187 - 30637420
Alignment:
Q  295 attaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacac 394  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  30637187 attaattatgcacctccttagaggtacacccccactatataaacactaataaagtgtgggatccgtccgatgcgggacttccacttttttcaattcacac 30637286  T
Q  395 tacactattttacaagtaagctgcgattctgctctacaaatgagtttacatcacgcaaatcaaacaactttacaa-ttctagggatctaagaga-----a 488  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||| ||||||     |    
T  30637287 tacactattttacaagtaagttgcgattctgctctacaaatgagtttacatcacaaaaatcaaacaactttacaatttctagggatccaagagagagaga 30637386  T
Q  489 aaaagatgaagggtaaatatataaacctagtgga 522  Q
    |||| |||||||||||||||||| ||||||||||    
T  30637387 aaaaaatgaagggtaaatatatatacctagtgga 30637420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 272 - 405
Target Start/End: Original strand, 30635784 - 30635917
Alignment:
Q  272 tcatttagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtggga 371  Q
    ||||||||||| ||||| ||||| |||||||||||||| ||||||| |||||||| |||||  |||||||| ||| ||||||||||||| ||||||||||    
T  30635784 tcatttagtgcatacttggttcacttaattatgcacctccttagaggtacacccctactattcaaacactaataaagtgtgggatccgtccgatgtggga 30635883  T
Q  372 cttccacttttttcaattcacactacactatttt 405  Q
    ||||||||||||||||||||||||||||||||||    
T  30635884 cttccacttttttcaattcacactacactatttt 30635917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 6296945 - 6296858
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||| | ||||||||| ||||||||||||||||||||||||||||||    
T  6296945 ttagaggtacacccccactatataaacactactaatgtgtg--atccatccgatgtgggtcttccacttttttcaattcacactacacta 6296858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 401
Target Start/End: Complemental strand, 10159786 - 10159665
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 376  Q
    ||||||||||||||| ||  ||| |||| |||| ||||||| ||||||||||||||||||||||||||||| ||||   ||| | |||||||||||||||    
T  10159786 tagtgcttacttcgtccacataactatgtacct-cttagaggtacacccccactatataaacactactaatatgtgt--tccatccgatgtgggacttcc 10159690  T
Q  377 acttttttcaattcacactacacta 401  Q
    |||||||||||||||||| ||||||    
T  10159689 acttttttcaattcacacaacacta 10159665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 22845430 - 22845518
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| ||||||||||| |||||||||||||| ||||||| ||||| | ||||| ||||||||||| ||||||||||||||||||||||    
T  22845430 ttagaggtacacccccaccatataaacactactgatgtgtgagatccatccgatgcgggacttccac-tttttcaattcacactacacta 22845518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 283 - 400
Target Start/End: Original strand, 35602629 - 35602745
Alignment:
Q  283 ttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccactttt 382  Q
    ||||||| ||||  |||||||| | ||| |||||| |||||| ||| ||||||||||||||||||||||| | ||| | ||||||| |||||||||||||    
T  35602629 ttacttcattcacataattatgtatctt-ttagaggtacacctccaatatataaacactactaatgtgtgtgttccatccgatgtgagacttccactttt 35602727  T
Q  383 ttcaattcacactacact 400  Q
    |||||||||||| |||||    
T  35602728 ttcaattcacacaacact 35602745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 30659169 - 30659271
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 376  Q
    ||||||||||||||||||| ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||    | ||| | |||||||||||||||    
T  30659169 tagtgcttacttcgttcaaataactatgtacct-cttagaggtacacccccactatataaacactactaatgt---tgttccatccgatgtgggacttcc 30659264  T
Q  377 acttttt 383  Q
    |||||||    
T  30659265 acttttt 30659271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 28856147 - 28856231
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactaca 398  Q
    |||||| |||| |||||| ||||||||||||||||||||||  |||| |  ||||||||||||||||||||||||||||||||||||    
T  28856147 ttagaggtacatccccaccatataaacactactaatgtgtg--atccatctgatgtgggacttccacttttttcaattcacactaca 28856231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 17328443 - 17328512
Alignment:
Q  274 atttagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactac 343  Q
    ||||||||||||||| ||||| |||||||||||||  ||| |||  |||| |||||||||||||||||||    
T  17328443 atttagtgcttactttgttcacttaattatgcacccccttggaggaacacacccactatataaacactac 17328512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 349
Target Start/End: Complemental strand, 19588755 - 19588682
Alignment:
Q  275 tttagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgt 349  Q
    ||||||||||| ||| ||||  |||||||| | | | |||||| |||||||||||||||||||||||||||||||    
T  19588755 tttagtgcttaattcattcacgtaattatgtatcat-ttagaggtacacccccactatataaacactactaatgt 19588682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 30629915 - 30629992
Alignment:
Q  324 ccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||||||||||| ||||||||| || | ||||  | | ||||  |||||||| |||||||||||||||||||||||    
T  30629915 ccccactatataaaaactactaatatgggtgatctatccaatgtaagacttccatttttttcaattcacactacacta 30629992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 33527767 - 33527724
Alignment:
Q  226 ataccaaaaccttttcaaaaggtagagaatctaaaattgggcat 269  Q
    |||||||||||||||||||||||||  |||||||| ||||||||    
T  33527767 ataccaaaaccttttcaaaaggtagtaaatctaaagttgggcat 33527724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 26268632 - 26268467
Alignment:
Q  1 caaaaagggttacactcacctatggttgaaaactgattctatgttggtttgtttagatttaaagttttctgctaatgttccttggattttaagaactaga 100  Q
    |||||||||||||||||||||||||||| ||||| |      |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  26268632 caaaaagggttacactcacctatggttggaaactca------gttggtttgtttagctttaaagtcttctgctaatgttccttggattttaagaactaga 26268539  T
Q  101 tggcaaaactgtttgnnnnnnngttagaagcatcaatttcatttaattattcaaaatcttttttctacaaaca 173  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26268538 tggcaaaactgtttg-ttttttgttagaagcatcaatttcatttaattattcaaaatcttttttctataaaca 26268467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 401
Target Start/End: Complemental strand, 2759327 - 2759202
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcacct-tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttc 375  Q
    ||||||||||||||||||  |||||||| |||| | |||||| | |||||||| |||||||| |||||||||||||  | ||| |||||||||||||||     
T  2759327 tagtgcttacttcgttcacataattatgtacctctattagaggtgcacccccattatataaatactactaatgtgtatgttccattcgatgtgggacttt 2759228  T
Q  376 cacttttttcaattcacactacacta 401  Q
    ||| ||||||||||||||||||||||    
T  2759227 cacatttttcaattcacactacacta 2759202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 394
Target Start/End: Complemental strand, 28963944 - 28963824
Alignment:
Q  275 tttagtgcttacttcgttcaattaattatgcacct--tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggac 372  Q
    |||||||||||||||||||  ||||||||| |||   |||||||| |||||||||  ||||||||||||||||||||||| | | | | | |||||||||    
T  28963944 tttagtgcttacttcgttctcttaattatgtaccccctcttagaggtacacccccgatatataaacactactaatgtgtgagttgcatccaatgtgggac 28963845  T
Q  373 ttccacttttttcaattcacac 394  Q
    |||||||||||| |||||||||    
T  28963844 ttccactttttt-aattcacac 28963824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 26268384 - 26268336
Alignment:
Q  226 ataccaaaaccttttcaaaaggtagagaatctaaaattgggcattctca 274  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26268384 ataccaaaaccttttcaaaagatagagaatctaaaattgggcattctca 26268336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 15645695 - 15645771
Alignment:
Q  276 ttagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtg 352  Q
    |||||||||||||||||||  |||||||| | |  ||||||| | ||||| ||||||||||| || |||||||||||    
T  15645695 ttagtgcttacttcgttcacataattatgtagccgcttagaggtgcaccctcactatataaataccactaatgtgtg 15645771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 394
Target Start/End: Complemental strand, 29157222 - 29157136
Alignment:
Q  311 cttagagatacaccc-ccactatataaacacta--ctaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacac 394  Q
    ||||||| ||||||| |||||||||||||||||  |||||||||   |||| | | |||| ||||||||| ||||||||||||||||    
T  29157222 cttagaggtacaccctccactatataaacactatactaatgtgtctaatccatccaatgtaggacttccatttttttcaattcacac 29157136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 393
Target Start/End: Original strand, 15501673 - 15501737
Alignment:
Q  329 ctatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcaca 393  Q
    |||||| ||||||||| ||||||| ||| | ||| ||||   |||||||||||||||||||||||    
T  15501673 ctatatgaacactactcatgtgtgtgattcattctatgtataacttccacttttttcaattcaca 15501737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 277 - 401
Target Start/End: Complemental strand, 31448934 - 31448811
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 376  Q
    ||||||||||||||||||  ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||    
T  31448934 tagtgcttacttcgttcacataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcc 31448836  T
Q  377 acttttttcaattcacactacacta 401  Q
    |||||||||||||||||| ||||||    
T  31448835 acttttttcaattcacacaacacta 31448811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 277 - 401
Target Start/End: Complemental strand, 43301813 - 43301690
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 376  Q
    ||||||||||||||||||  ||| |||| |||| ||||||| ||||||||||||||||||||||||||||||| || | ||| | |||||| ||||||||    
T  43301813 tagtgcttacttcgttcagataactatgtacct-cttagaggtacacccccactatataaacactactaatgtatgtgttccatccgatgtaggacttcc 43301715  T
Q  377 acttttttcaattcacactacacta 401  Q
    |||||||||||||||||| ||||||    
T  43301714 acttttttcaattcacacaacacta 43301690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 278 - 401
Target Start/End: Complemental strand, 4237409 - 4237288
Alignment:
Q  278 agtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca 377  Q
    |||||||||||||||||  ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||    
T  4237409 agtgcttacttcgttcacataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcca 4237311  T
Q  378 cttttttcaattcacactacacta 401  Q
    || |||||||||||||| ||||||    
T  4237310 ct-ttttcaattcacacaacacta 4237288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 278 - 401
Target Start/End: Complemental strand, 4242148 - 4242027
Alignment:
Q  278 agtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca 377  Q
    |||||||||||||||||  ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||    
T  4242148 agtgcttacttcgttcacataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcca 4242050  T
Q  378 cttttttcaattcacactacacta 401  Q
    || |||||||||||||| ||||||    
T  4242049 ct-ttttcaattcacacaacacta 4242027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 312 - 396
Target Start/End: Complemental strand, 8330411 - 8330329
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacacta 396  Q
    |||||| |||||||| ||||||||||||||||||||||||  ||||| | ||||||||||||| |||||||||||||||||||||    
T  8330411 ttagaggtacacccctactatataaacactactaatgtgt--gatccatccgatgtgggactttcacttttttcaattcacacta 8330329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 401
Target Start/End: Complemental strand, 25361747 - 25361668
Alignment:
Q  319 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||| |||||||||||||| |||||||||||||  ||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  25361747 tacatccccactatataaatactactaatgtgt--gatccatccgatgtgggacttccac-tttttcaattcacactacacta 25361668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 37772777 - 37772866
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca---cttttttcaattcacactacacta 401  Q
    |||||| |||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||    |||||||||||||||||||||||    
T  37772777 ttagaggtacacccccactatataaacactactaatgtgt--gatcc-atcgatgtgggacttccattttttttttcaattcacactacacta 37772866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 18945079 - 18945004
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtg 352  Q
    |||| |||||||| |||| |||||||||||||   |||||| || ||||| | |||||||||||||||||||||||    
T  18945079 tagtccttacttcattcacttaattatgcacccctttagaggtataccccaattatataaacactactaatgtgtg 18945004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 21959473 - 21959529
Alignment:
Q  340 ctactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactaca 398  Q
    |||||||||||||  |||| || |||||| |||||||||||||||||||||||||||||    
T  21959473 ctactaatgtgtg--atccatttgatgtgagacttccacttttttcaattcacactaca 21959529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 34817771 - 34817682
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca--cttttttcaattcacactacacta 401  Q
    |||||| ||||| |||| ||||||||||||||||||||||  ||||| | |||||| | |||||||   ||||||||||| |||||||||||    
T  34817771 ttagaggtacactcccaatatataaacactactaatgtgt--gatccatccgatgtagaacttccatttttttttcaatttacactacacta 34817682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 14036507 - 14036572
Alignment:
Q  322 acccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaatt 389  Q
    ||||||||||||||||||||| || | ||||  |||| ||| ||||| ||||||||||||||||||||    
T  14036507 acccccactatataaacactaatagtatgtg--atccattcaatgtgagacttccacttttttcaatt 14036572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 42973153 - 42973242
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| ||||||||||||||||||||| || |||| |||| | | | |  |||||| ||||||||||||||| || |||| | ||||||    
T  42973153 ttagaggtacacccccactatataaacattattaatatgtgtgtttcatctgatgtgagacttccactttttttaagtcacgcaacacta 42973242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 19195946 - 19195986
Alignment:
Q  229 ccaaaaccttttcaaaaggtagagaatctaaaattgggcat 269  Q
    |||||||||||||||||||| | ||||||||| ||||||||    
T  19195946 ccaaaaccttttcaaaaggtggtgaatctaaagttgggcat 19195986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 277 - 401
Target Start/End: Original strand, 8888941 - 8889064
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 376  Q
    ||||||||||||||||||  ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||    
T  8888941 tagtgcttacttcgttcacataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcc 8889039  T
Q  377 acttttttcaattcacactacacta 401  Q
    |||||||||||||||||| ||||||    
T  8889040 acttttttcaattcacacaacacta 8889064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 277 - 401
Target Start/End: Original strand, 8884195 - 8884318
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 376  Q
    |||||||||||||||||   ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||    
T  8884195 tagtgcttacttcgttctcataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcc 8884293  T
Q  377 acttttttcaattcacactacacta 401  Q
    | |||||||||||||||| ||||||    
T  8884294 atttttttcaattcacacaacacta 8884318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 278 - 401
Target Start/End: Original strand, 3673592 - 3673713
Alignment:
Q  278 agtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca 377  Q
    |||||||||||||||||  ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||    
T  3673592 agtgcttacttcgttcacataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcca 3673690  T
Q  378 cttttttcaattcacactacacta 401  Q
    | ||||||||||||||| ||||||    
T  3673691 c-tttttcaattcacacaacacta 3673713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 394
Target Start/End: Original strand, 3693646 - 3693760
Alignment:
Q  278 agtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca 377  Q
    |||||||||||||||||  ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||    
T  3693646 agtgcttacttcgttcacataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcca 3693744  T
Q  378 cttttttcaattcacac 394  Q
    | |||||||||||||||    
T  3693745 c-tttttcaattcacac 3693760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 278 - 401
Target Start/End: Original strand, 8070705 - 8070824
Alignment:
Q  278 agtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca 377  Q
    |||||||||||||||||  ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||  | ||| | ||||||||||||||||    
T  8070705 agtgcttacttcgttcacataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgt--gttccatccgatgtgggacttcca 8070801  T
Q  378 cttttttcaattcacactacacta 401  Q
     |||||||||||||||| ||||||    
T  8070802 -ttttttcaattcacacaacacta 8070824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 401
Target Start/End: Original strand, 3034670 - 3034791
Alignment:
Q  278 agtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca 377  Q
    |||||||||||||||||  ||| |||  ||||| |||||| ||||||||||||||||||||||||||||||||||   ||| | ||||||||||||||||    
T  3034670 agtgcttacttcgttcacataactatatacctt-ttagaggtacacccccactatataaacactactaatgtgtgtattccatccgatgtgggacttcca 3034768  T
Q  378 cttttttcaattcacactacacta 401  Q
    | ||||||||||||||| ||||||    
T  3034769 c-tttttcaattcacacaacacta 3034791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 10585214 - 10585128
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| |||||||||||||||||||||||||||||||||  ||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  10585214 ttagaggtacacccccactatataaacactactaatgtgt--gatccatccgatgtgggacttccac-tttttcaattcacactacacta 10585128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 631995 - 632084
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||| | ||| |||  ||||| |||||||| ||||||||||| ||||    
T  631995 ttagaggtacacccccactatataaacactactaatgtgagggatccatccgacgtgaaacttctactttttttaattcacactaaacta 632084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 401
Target Start/End: Complemental strand, 45903598 - 45903522
Alignment:
Q  323 cccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    ||||||||||||||||||||||||||||||  |||  | ||||||| |||||||| |||||||||||||||||||||||    
T  45903598 cccccactatataaacactactaatgtgtg--atctatccgatgtgagacttccaattttttcaattcacactacacta 45903522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 7578700 - 7578657
Alignment:
Q  226 ataccaaaaccttttcaaaaggtagagaatctaaaattgggcat 269  Q
    |||||||||||||||||||||||||  |||||||| ||||||||    
T  7578700 ataccaaaaccttttcaaaaggtagtaaatctaaagttgggcat 7578657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 31136915 - 31136872
Alignment:
Q  226 ataccaaaaccttttcaaaaggtagagaatctaaaattgggcat 269  Q
    |||||||||||||||||||||||||  |||||||| ||||||||    
T  31136915 ataccaaaaccttttcaaaaggtagtaaatctaaagttgggcat 31136872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 277 - 401
Target Start/End: Complemental strand, 8951 - 8828
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 376  Q
    ||||||||||||||||||  ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||| | |||||||||| ||||    
T  8951 tagtgcttacttcgttcacataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggatttcc 8853  T
Q  377 acttttttcaattcacactacacta 401  Q
    |||||||||||||||||| ||||||    
T  8852 acttttttcaattcacacaacacta 8828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 277 - 401
Target Start/End: Complemental strand, 12044201 - 12044078
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 376  Q
    ||||||||||||||||||  ||| |||| |||| |||| ||||||||||||||||||||||||||||||||||||| | ||| | ||||| ||||||| |    
T  12044201 tagtgcttacttcgttcacataactatgtacct-cttaaagatacacccccactatataaacactactaatgtgtgtgttccatccgatgagggactttc 12044103  T
Q  377 acttttttcaattcacactacacta 401  Q
    |||||||||||||||||| ||||||    
T  12044102 acttttttcaattcacacaacacta 12044078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 278 - 401
Target Start/End: Original strand, 557722 - 557843
Alignment:
Q  278 agtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca 377  Q
    |||||||||||||||||  ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||    
T  557722 agtgcttacttcgttcacataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcca 557820  T
Q  378 cttttttcaattcacactacacta 401  Q
    | ||||||||||||||| ||||||    
T  557821 c-tttttcaattcacacaacacta 557843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 21323070 - 21322983
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||||||||||||||||||||||||    
T  21323070 ttagaggtacacccccactatataaacactactaatgtgtg--atccatccgatgtgggacttccacttttttcaattcacactacacta 21322983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 277 - 401
Target Start/End: Complemental strand, 32460614 - 32460491
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 376  Q
    |||| |||||||| ||||  ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||| | |||||||| ||||||    
T  32460614 tagtacttacttcattcacataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtggtacttcc 32460516  T
Q  377 acttttttcaattcacactacacta 401  Q
    |||||||||||||||||| ||||||    
T  32460515 acttttttcaattcacacaacacta 32460491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 278 - 393
Target Start/End: Complemental strand, 36941332 - 36941219
Alignment:
Q  278 agtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca 377  Q
    |||||||||||||||||  ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||    
T  36941332 agtgcttacttcgttcacataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcca 36941234  T
Q  378 cttttttcaattcaca 393  Q
    || |||||||||||||    
T  36941233 ct-ttttcaattcaca 36941219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 13300519 - 13300432
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||| |  |||||||||||||||||||||||||||||||||||||||    
T  13300519 ttagaggtacacccccactatataaacactactaatgtgtg--atccatctgatgtgggacttccacttttttcaattcacactacacta 13300432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 401
Target Start/End: Original strand, 41997670 - 41997790
Alignment:
Q  280 tgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccact 379  Q
    |||||||||||||||  ||| |||| |||| || |||  |||||||||| ||||||||||||||||||||||| | ||| | ||||||||||||||||||    
T  41997670 tgcttacttcgttcacataactatgtacctcct-agaagtacacccccaatatataaacactactaatgtgtgtgttccatccgatgtgggacttccact 41997768  T
Q  380 tttttcaattcacactacacta 401  Q
    ||||||||||||||| ||||||    
T  41997769 tttttcaattcacacaacacta 41997790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 278 - 401
Target Start/End: Original strand, 562494 - 562613
Alignment:
Q  278 agtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca 377  Q
    |||||||||||||||||  ||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||  | ||| | ||||||||||||||||    
T  562494 agtgcttacttcgttcacataactatgtacct-cttagaggtacacccccactatataaacactactaatgtgt--gttccatccgatgtgggacttcca 562590  T
Q  378 cttttttcaattcacactacacta 401  Q
    | ||||||||||||||| ||||||    
T  562591 c-tttttcaattcacacaacacta 562613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 401
Target Start/End: Complemental strand, 36936578 - 36936457
Alignment:
Q  278 agtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca 377  Q
    |||||||||||||||||  ||| |||| |||| ||||||| |||||||| ||||||||||||||||||||||||| | ||| ||||||||| ||||||||    
T  36936578 agtgcttacttcgttcacataactatgtacct-cttagaggtacacccctactatataaacactactaatgtgtgtgttccattcgatgtgagacttcca 36936480  T
Q  378 cttttttcaattcacactacacta 401  Q
    | | ||||||||||||| ||||||    
T  36936479 c-tgtttcaattcacacaacacta 36936457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 31732612 - 31732698
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| |||||||||||||||||||||||||||||||||  |||||  ||||||||||||||||| |||||||||||||||||||||||    
T  31732612 ttagaggtacacccccactatataaacactactaatgtgt--gatcc-atcgatgtgggacttccatttttttcaattcacactacacta 31732698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 280 - 401
Target Start/End: Original strand, 42002461 - 42002581
Alignment:
Q  280 tgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccact 379  Q
    |||||||||||||||  ||| |||| |||| || |||  ||||||| || ||||||||||||||||||||||| | ||| | ||||||||||||||||||    
T  42002461 tgcttacttcgttcacataactatgtacctcct-agaagtacaccctcaatatataaacactactaatgtgtgtgttccatccgatgtgggacttccact 42002559  T
Q  380 tttttcaattcacactacacta 401  Q
    ||||||||||||||| ||||||    
T  42002560 tttttcaattcacacaacacta 42002581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 36949777 - 36949835
Alignment:
Q  343 ctaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  36949777 ctaatgtgtgggatccatccgatgtgggacttccacttttttcaattcacactacacta 36949835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 401
Target Start/End: Complemental strand, 24435204 - 24435126
Alignment:
Q  319 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||| ||||| ||||||||||||||||||||||  ||||| ||||| ||| ||||||  ||||||||||||||||||||||||    
T  24435204 tacaaccccattatataaacactactaatgtgt--gatccattcgaagtgagacttc--cttttttcaattcacactacacta 24435126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 277 - 404
Target Start/End: Original strand, 3666899 - 3667023
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcacct-tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttc 375  Q
    |||||||||| |||||||  |||||||| |||  | |||||| |||||||||||||||  |||||||||||||  ||   ||| | ||||||||||||||    
T  3666899 tagtgcttacatcgttcacataattatgtacccctattagaggtacacccccactata--aacactactaatgcttgt--tccatccgatgtgggacttc 3666994  T
Q  376 cacttttttcaattcacactacactattt 404  Q
    ||| |||||||||| |||| |||||||||    
T  3666995 cacctttttcaatttacacaacactattt 3667023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 27813824 - 27813776
Alignment:
Q  226 ataccaaaaccttttcaaaaggtagagaatctaaaattgggcattctca 274  Q
    ||||||||||||||||||||||||||||||||||| || | ||||||||    
T  27813824 ataccaaaaccttttcaaaaggtagagaatctaaagtttgacattctca 27813776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 399
Target Start/End: Complemental strand, 23347925 - 23347857
Alignment:
Q  331 atataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacac 399  Q
    ||||||| ||||  |||||||| ||||| ||   ||||||||||| |||||||||||||||||||||||    
T  23347925 atataaatactatcaatgtgtgtgatccatttagtgtgggacttctacttttttcaattcacactacac 23347857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 401
Target Start/End: Complemental strand, 8041286 - 8041205
Alignment:
Q  314 agagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||| ||| ||||||||||||||||||||    |||||| ||||| | ||||||||||||||||   |||||||||||||||| ||||    
T  8041286 agaggtacgcccccactatataaacacta----tgtgtgagatccatccgatgtgggacttcca--attttcaattcacactatacta 8041205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 27813940 - 27813906
Alignment:
Q  141 atttaattattcaaaatcttttttctacaaacaag 175  Q
    ||||||||||||||| |||||||||||||||||||    
T  27813940 atttaattattcaaagtcttttttctacaaacaag 27813906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 400
Target Start/End: Complemental strand, 23976469 - 23976383
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacact 400  Q
    |||||| ||||||| ||||||||||||| |||||||||||  ||||| | |  |  | || |||||||||||||||||||||| |||||    
T  23976469 ttagaggtacaccctcactatataaacattactaatgtgt--gatccatccagtacgagatttccacttttttcaattcacacaacact 23976383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 2452036 - 2452101
Alignment:
Q  332 tataaacactactaatgtgtgggatccgttcgatgtgggacttccac-ttttttcaattcacactaca 398  Q
    ||||||||||||||||||||  ||||| | |||| || ||||||||| ||||||||||||| ||||||    
T  2452036 tataaacactactaatgtgt--gatccatccgatatgagacttccactttttttcaattcatactaca 2452101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 277 - 398
Target Start/End: Original strand, 41817810 - 41817930
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcacct-tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttc 375  Q
    ||||||||||||||||||  |||||||| |||  | |||||||||||||||||||||||||||||||||||| |||  ||||| | |||||||| |||||    
T  41817810 tagtgcttacttcgttcacataattatgtacccctattagagatacacccccactatataaacactactaatatgt--gatccatccgatgtggaacttc 41817907  T
Q  376 cacttttttcaattcacactaca 398  Q
    |||||||||||||||||||||||    
T  41817908 cacttttttcaattcacactaca 41817930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 3992802 - 3992715
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| |||||||||||||||||||||||||||||||||  ||||| | ||||||||||||||||| ||||||||||||||| ||||||    
T  3992802 ttagaggtacacccccactatataaacactactaatgtgt--gatccatccgatgtgggacttccacctttttcaattcacaccacacta 3992715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 34561468 - 34561555
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| ||||||||||||||||||| |||||||||||||  ||||| | ||| ||||||||||||||||||||||||||||||| ||||    
T  34561468 ttagaggtacacccccactatataaatactactaatgtgt--gatccatccgacgtgggacttccacttttttcaattcacactatacta 34561555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 401
Target Start/End: Complemental strand, 7899973 - 7899900
Alignment:
Q  325 cccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    ||||||||||||||||||||||||||||  |||| || |||||||||||||||||||||||||||||||| ||||||    
T  7899973 cccactatataaacactactaatgtgtg--atccatt-gatgtgggacttccacttttttcaattcacaccacacta 7899900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 401
Target Start/End: Complemental strand, 13521055 - 13520932
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 376  Q
    ||||||||||||| ||||  ||| |||| |||| ||||||  ||||||   |||||||||||||||||||||||||   | | | |||||||| ||||||    
T  13521055 tagtgcttacttcattcacataactatgtacct-cttagatgtacacctggactatataaacactactaatgtgtgtatttcatccgatgtggaacttcc 13520957  T
Q  377 acttttttcaattcacactacacta 401  Q
    |||||||||||||||||| ||||||    
T  13520956 acttttttcaattcacacaacacta 13520932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 319 - 401
Target Start/End: Complemental strand, 31297553 - 31297472
Alignment:
Q  319 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    ||||||||||||||||||||| ||| |||||||| | ||| | |||||| | ||||||||| |||||||||||||| ||||||    
T  31297553 tacacccccactatataaacattacaaatgtgtgtgttccatccgatgtagaacttccact-ttttcaattcacacaacacta 31297472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 392
Target Start/End: Original strand, 39320625 - 39320703
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcac 392  Q
    |||||| ||||||||||||||||||||| ||||||||||||  |||  | | |||| | ||||||||||||||||||||||    
T  39320625 ttagaggtacacccccactatataaacattactaatgtgtg--atctatccaatgtagaacttccacttttttcaattcac 39320703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 352
Target Start/End: Complemental strand, 26187888 - 26187815
Alignment:
Q  279 gtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtg 352  Q
    |||||||||||||||| ||||||||||| |   || ||| |||| |||||||||||||| ||||||| ||||||    
T  26187888 gtgcttacttcgttcacttaattatgcatcccatttgaggtacaaccccactatataaatactactagtgtgtg 26187815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 11673492 - 11673535
Alignment:
Q  228 accaaaaccttttcaaaaggtagagaatctaaaattgggcattc 271  Q
    |||||||||||||||||||||  |||||||||| ||||||||||    
T  11673492 accaaaaccttttcaaaaggtgcagaatctaaagttgggcattc 11673535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 55469011 - 55468968
Alignment:
Q  226 ataccaaaaccttttcaaaaggtagagaatctaaaattgggcat 269  Q
    |||||||||||||||||||||||||  |||||||| ||||||||    
T  55469011 ataccaaaaccttttcaaaaggtagtaaatctaaagttgggcat 55468968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 15799205 - 15799133
Alignment:
Q  278 agtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtg 352  Q
    |||||||||||| |||| |||||||||||||  |||| || |||||||||| ||  |||||||||||||||||||    
T  15799205 agtgcttacttcattcatttaattatgcacccccttataggtacaccccca-ta-ctaaacactactaatgtgtg 15799133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 15541600 - 15541637
Alignment:
Q  364 atgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  15541600 atgtgggacttccactttcttcaattcgcactacacta 15541637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 36209215 - 36209183
Alignment:
Q  369 ggacttccacttttttcaattcacactacacta 401  Q
    |||||||||||||||||||||||||| ||||||    
T  36209215 ggacttccacttttttcaattcacacaacacta 36209183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 27257280 - 27257367
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||| |  |||||||||||||||||||||||||||||||||||||||    
T  27257280 ttagagatacacccccactatataaacactactaatgtgt--gatccatctgatgtgggacttccacttttttcaattcacactacacta 27257367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 399
Target Start/End: Original strand, 47102560 - 47102681
Alignment:
Q  279 gtgcttacttcgttcaattaattatgcacct-tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca 377  Q
    ||||||||||||||||  |||||||| |||  | |||||| |||||||||| ||||||||||||||| ||||||| | ||| | || | |||||||||||    
T  47102560 gtgcttacttcgttcacataattatgtacccctattagaggtacacccccaatatataaacactactgatgtgtgtgttccatccgctatgggacttcca 47102659  T
Q  378 cttttttcaattcacactacac 399  Q
    |||||||||||| |||| ||||    
T  47102660 cttttttcaatttacacaacac 47102681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 40864432 - 40864343
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca--cttttttcaattcacactacacta 401  Q
    |||||| |||||| ||||||||||||||||||||||||||  ||||| | |||| |||||||||||   |||||||||||||||||||||||    
T  40864432 ttagaggtacacctccactatataaacactactaatgtgt--gatccatccgatctgggacttccatttttttttcaattcacactacacta 40864343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 401
Target Start/End: Complemental strand, 9650030 - 9649907
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 376  Q
    ||||||||||||| ||||  ||| |||| |||| ||||||  ||||||   |||||||||||||||||||||||||   | | | |||||||| ||||||    
T  9650030 tagtgcttacttcattcacataactatgtacct-cttagatgtacacctggactatataaacactactaatgtgtgtatttcatccgatgtggaacttcc 9649932  T
Q  377 acttttttcaattcacactacacta 401  Q
    |||||||||||||||||| ||||||    
T  9649931 acttttttcaattcacacaacacta 9649907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 401
Target Start/End: Original strand, 23866754 - 23866870
Alignment:
Q  281 gcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccac-t 379  Q
    ||||||||| ||||  ||| |||| |||| ||||||| |||||||||| ||||||||||||||||||||||    ||| | | ||||||||||||||| |    
T  23866754 gcttacttcattcacataactatgtacct-cttagaggtacacccccattatataaacactactaatgtgt----tccatccaatgtgggacttccactt 23866848  T
Q  380 tttttcaattcacactacacta 401  Q
    ||||||||||||||| ||||||    
T  23866849 tttttcaattcacacaacacta 23866870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 330 - 401
Target Start/End: Complemental strand, 11017101 - 11017025
Alignment:
Q  330 tatataaacactactaatgtgtgggatccgttcgatgtgggacttccactttttt-----caattcacactacacta 401  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||     |||||||||||||||||    
T  11017101 tatataaacactactaatgtgtgtgatccatccgatgtgggacttccatttttttttctacaattcacactacacta 11017025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 19641315 - 19641421
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcacc-ttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttc 375  Q
    |||| |||||||||||||  ||||||| |||| || ||||||  |||||||| ||||||||||||||||||| |||  ||| | ||||||||| || |||    
T  19641315 tagtacttacttcgttcacataattatacacccttattagaggcacacccccgctatataaacactactaatatgt--gattcattcgatgtgagatttc 19641412  T
Q  376 cactttttt 384  Q
    |||||||||    
T  19641413 cactttttt 19641421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 401
Target Start/End: Complemental strand, 13343477 - 13343374
Alignment:
Q  298 aattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactac 397  Q
    ||||| ||||||  |||||  |||||||| | |||||||||| || ||||| ||| | ||| | ||||| ||||| ||||||||||||||||||||| ||    
T  13343477 aattacgcacctctttagatgtacaccccaattatataaacaatattaatgcgtgtgttccatccgatgcgggacatccacttttttcaattcacacaac 13343378  T
Q  398 acta 401  Q
    ||||    
T  13343377 acta 13343374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 8077029 - 8077098
Alignment:
Q  283 ttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtg 352  Q
    |||||| |||||  |||||||| ||| | |||||| |||||||||| |||||||| ||||||||||||||    
T  8077029 ttactttgttcacataattatgtaccctattagaggtacacccccaatatataaatactactaatgtgtg 8077098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 1044244 - 1044304
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaa 337  Q
    ||||||||||||||||||  |||||| | ||| |||||||| |||||||||| ||||||||    
T  1044244 tagtgcttacttcgttcacataattacgtaccctcttagagctacacccccattatataaa 1044304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 401
Target Start/End: Complemental strand, 10499163 - 10499074
Alignment:
Q  310 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||||| |||||||  | |||||||||| ||||||||||||   ||| | | ||  ||||||||||||||||||||||||||| ||||||    
T  10499163 tcttagaggtacaccctaattatataaacaatactaatgtgtgt--tccatccaattcgggacttccacttttttcaattcacacaacacta 10499074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 401
Target Start/End: Complemental strand, 10504192 - 10504103
Alignment:
Q  310 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||||| |||||||  | |||||||||| ||||||||||||   ||| | | ||  ||||||||||||||||||||||||||| ||||||    
T  10504192 tcttagaggtacaccctaattatataaacaatactaatgtgtgt--tccatccaattcgggacttccacttttttcaattcacacaacacta 10504103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 18330372 - 18330336
Alignment:
Q  365 tgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||||||||||||||||||||||||||| ||||||    
T  18330372 tgtgggacttccacttttttcaattcacacaacacta 18330336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 349
Target Start/End: Original strand, 9010415 - 9010444
Alignment:
Q  320 acacccccactatataaacactactaatgt 349  Q
    ||||||||||||||||||||||||||||||    
T  9010415 acacccccactatataaacactactaatgt 9010444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 40997827 - 40997790
Alignment:
Q  364 atgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  40997827 atgtgggatttccacttttttcgattcacactacacta 40997790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 11040616 - 11040568
Alignment:
Q  326 ccactatataaacactactaatgtgtgggatccgttcgatgtgggactt 374  Q
    ||||||||||||||||||||||||||| ||| | ||| ||||| |||||    
T  11040616 ccactatataaacactactaatgtgtgtgattcattcaatgtgagactt 11040568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 34754 - 34667
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| |||||||||||||||||||||||| |||||||||  |||| | ||||||||||||||||||||||||||||||||||||||||    
T  34754 ttagaggtacacccccactatataaacactattaatgtgtg--atccatacgatgtgggacttccacttttttcaattcacactacacta 34667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 278 - 401
Target Start/End: Original strand, 3095115 - 3095236
Alignment:
Q  278 agtgcttacttcgttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca 377  Q
    ||||||||||| |||||  ||| |||| |||| |||| || |||||||||||||||||||||||||||||||||| | | | | ||||||||||||||||    
T  3095115 agtgcttactttgttcacataactatgtacct-cttaaaggtacacccccactatataaacactactaatgtgtgtgtttcatccgatgtgggacttcca 3095213  T
Q  378 cttttttcaattcacactacacta 401  Q
    | ||||||||||||||| ||||||    
T  3095214 c-tttttcaattcacacaacacta 3095236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 40232415 - 40232337
Alignment:
Q  319 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactaca 398  Q
    ||||||||||||||||||||||||||||  |||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  40232415 tacacccccactatataaacactactaaa-tgtgtgatccatccgatgtgggacttccacttttttcaattcacactaca 40232337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 33055849 - 33055929
Alignment:
Q  319 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| |||||||||||||||||||||||||||  |||| | |||||||||||||||| ||||||||||||||||| |||||    
T  33055849 tacacctccactatataaacactactaatgtgtg--atccatccgatgtgggacttccatttttttcaattcacactgcacta 33055929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 13894310 - 13894395
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactac 397  Q
    |||||||||| |||| ||||||||||||||| |||||||| |||||| | |||||||| |||| ||||||||||| ||||| ||||    
T  13894310 ttagagatacgcccctactatataaacactattaatgtgtaggatccatccgatgtggaactttcacttttttcatttcactctac 13894395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 41096982 - 41096897
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| |||||||||||||||||||||||| |||||||||  |||| |  ||||||||||||||| |||||| ||||||||||||||||    
T  41096982 ttagaggtacacccccactatataaacactaataatgtgtg--atccatg-gatgtgggacttccattttttt-aattcacactacacta 41096897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 376
Target Start/End: Complemental strand, 8273224 - 8273126
Alignment:
Q  279 gtgcttacttcgttcaattaattatgcaccttctt-agagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 376  Q
    ||||||||||||||||  |||||||| || | | | |||| ||||  |||||||||||| ||||||||||||||| | ||| | |||||||||||||||    
T  8273224 gtgcttacttcgttcacataattatgtacgtccatcagaggtacaaacccactatataagcactactaatgtgtgtgctccatccgatgtgggacttcc 8273126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 40679233 - 40679192
Alignment:
Q  228 accaaaaccttttcaaaaggtagagaatctaaaattgggcat 269  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  40679233 accaaaaccttttcaaaaggtagaaaatctaaagttgggcat 40679192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 34428538 - 34428499
Alignment:
Q  226 ataccaaaaccttttcaaaaggtagagaatctaaaattgg 265  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  34428538 ataccaaaaccttttcaaaaggtagaaaatctaaagttgg 34428499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 48921045 - 48921002
Alignment:
Q  226 ataccaaaaccttttcaaaaggtagagaatctaaaattgggcat 269  Q
    |||||||||||||||||||||||||  |||||||| ||||||||    
T  48921045 ataccaaaaccttttcaaaaggtagtaaatctaaagttgggcat 48921002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 401
Target Start/End: Complemental strand, 14204546 - 14204512
Alignment:
Q  367 tgggacttccacttttttcaattcacactacacta 401  Q
    |||||||||||||||||||||||||||| ||||||    
T  14204546 tgggacttccacttttttcaattcacacaacacta 14204512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 394
Target Start/End: Complemental strand, 23254236 - 23254159
Alignment:
Q  319 tacacccccactatataaacacta--ctaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacac 394  Q
    ||||| ||||||||||||||| ||  |||||||||| ||||  | | || ||||||||||||| ||||||||||||||    
T  23254236 tacacacccactatataaacattatactaatgtgtgtgatctatccaatttgggacttccactcttttcaattcacac 23254159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 51945 - 51858
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| |||||||| |||||||||||||||||||||||||  |||| | ||| ||| ||||||||||||||||||||||||||||||||    
T  51945 ttagaggtacacccctactatataaacactactaatgtgtg--atccatccgacgtgtgacttccacttttttcaattcacactacacta 51858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 401
Target Start/End: Complemental strand, 46994 - 46919
Alignment:
Q  320 acacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    ||||||| ||||||||||||||||||||||      ||| | ||||||||||||||||||||||||||||||||||||||||    
T  46994 acacccctactatataaacactactaatgt------tccatccgatgtgggacttccacttttttcaattcacactacacta 46919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 48987 - 48904
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||||||||||||||    ||||||||||||||||||||  |||| | ||||||||||||||||||||||||||||||||||||||||    
T  48987 ttagagatacaccccca----ataaacactactaatgtgtg--atccatccgatgtgggacttccacttttttcaattcacactacacta 48904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 149647 - 149730
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||||||||||||||    ||||||||||||||||||||  |||| | ||||||||||||||||||||||||||||||||||||||||    
T  149647 ttagagatacaccccca----ataaacactactaatgtgtg--atccatccgatgtgggacttccacttttttcaattcacactacacta 149730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 277 - 394
Target Start/End: Original strand, 7457 - 7575
Alignment:
Q  277 tagtgcttacttcgttcaattaattatgcacct-tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttc 375  Q
    ||||||||||||||||||  |||||||| |||  | |||||| |||| |||||| ||||||||||| ||| |||||| | ||| | ||||||||||||||    
T  7457 tagtgcttacttcgttcacataattatgtacccctgttagaggtacaaccccacgatataaacacttctattgtgtgtgttccatccgatgtgggacttc 7556  T
Q  376 cacttttttcaattcacac 394  Q
    ||||||||| |||||||||    
T  7557 cacttttttaaattcacac 7575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 5747 - 5814
Alignment:
Q  334 taaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    ||||||||||||| ||||| | ||| || |||||||||||| || |||||||||||||||| ||||||    
T  5747 taaacactactaaagtgtgtgttccatttgatgtgggactttcatttttttcaattcacacaacacta 5814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 59469 - 59555
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| ||||||||||||||||||||| |||||||||||  ||||| | |||||||||| |||||| ||||||||||||||||||||||    
T  59469 ttagaggtacacccccactatataaacattactaatgtgt--gatccatccgatgtgggatttccac-tttttcaattcacactacacta 59555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 63671 - 63757
Alignment:
Q  312 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||||| ||||||||||||||||||||| |||||||||||  ||||| | |||||||||| |||||| ||||||||||||||||||||||    
T  63671 ttagaggtacacccccactatataaacattactaatgtgt--gatccatccgatgtgggatttccac-tttttcaattcacactacacta 63757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 401
Target Start/End: Original strand, 83929 - 84056
Alignment:
Q  279 gtgcttacttcgttcaattaattatgcaccttc-----ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggact 373  Q
    |||||||||||||||| ||||||||| |||  |     ||| || |||||| ||||||||||||||||||||||||||| | ||| ||| |||| |||||    
T  83929 gtgcttacttcgttcacttaattatgtacccccattaattacaggtacacctccactatataaacactactaatgtgtgtgttccattcaatgtaggact 84028  T
Q  374 tccacttttttcaattcacactacacta 401  Q
    | |||| |||||||||||||| ||||||    
T  84029 ttcactcttttcaattcacacaacacta 84056  T

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Target: scaffold0484 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 7983 - 8062
Alignment:
Q  319 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    |||| |||||||||||||| || |||||||||||  |||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  7983 tacatccccactatataaataccactaatgtgtg--atccatccgatgtgggacttccac-tttttcaattctcactacacta 8062  T

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Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 213375 - 213319
Alignment:
Q  340 ctactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactaca 398  Q
    |||||||||||||  |||| || |||||| |||||||||||||||||||||||||||||    
T  213375 ctactaatgtgtg--atccatttgatgtgagacttccacttttttcaattcacactaca 213319  T

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Target: scaffold0131 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 8622 - 8700
Alignment:
Q  322 acccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 401  Q
    ||||||| |||||||||| ||||| |||||| |||   | | ||||| ||||||||||||||||||||||||| ||||||    
T  8622 acccccattatataaacattacta-tgtgtgtgatttatacaatgtgagacttccacttttttcaattcacacaacacta 8700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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