View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9873_high_71 (Length: 240)
Name: NF9873_high_71
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_71 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35592232 - 35592010
Alignment:
| Q |
1 |
cacactatggattaatgaaaactccacaaccaaaaggtatgcatatatgataaatcatttaacttcagtaaattcctattttgttttatatatgacactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35592232 |
cacactatggattaatgaaaactccacaaccaaaaggtatgcatatatgataaatcatttaacttcagtaaattcctatttggttttatatatgacactt |
35592133 |
T |
|
| Q |
101 |
acataattaacttaacagtgaaagctgatagagaaggaggaaggccacttgaattgtcaattgaagagttagatgtcaacggtttcacagcaaatcaggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35592132 |
acataattaacttaacagtgaaagctgatagagaaggaggaagaccacttgaattgtcaattgaagagttagatgtcaacggtttcacagcaaatcaggg |
35592033 |
T |
|
| Q |
201 |
ttggagcaaaagcaaatttatgc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35592032 |
ttggagcaaaagcaaatttatgc |
35592010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35581356 - 35581134
Alignment:
| Q |
1 |
cacactatggattaatgaaaactccacaaccaaaaggtat--gcatatatgataaatcatttaacttcagtaaattcctattttgttttatatatgacac |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35581356 |
cacactatggattaatgaaaactccacaaccaaaaggtatatgcatatatgataaatcatttaacttcagtaaattcctatt--gttttatatatgacac |
35581259 |
T |
|
| Q |
99 |
ttacataattaacttaacagtgaaagctgatagagaaggaggaaggccacttgaattgtcaattgaagagttagatgtcaacggtttcacagcaaatcag |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
35581258 |
ttacataattaacttaacagtgaaagctgatagagaaggaggaagaccacttgaattgtcaattgaagagttagatgtcaacggcttcacagaaaatcag |
35581159 |
T |
|
| Q |
199 |
ggttggagcaaaagcaaatttatgc |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35581158 |
ggttggagcaaaagcaaatttatgc |
35581134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 35566430 - 35566331
Alignment:
| Q |
124 |
gctgatagagaaggaggaaggccacttgaattgtcaattgaagagttagatgtcaacggtttcacagcaaatcagggttggagcaaaagcaaatttatgc |
223 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||| |||||||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
35566430 |
gctgatagagaaggaggaacaccacttgatttctcagttgaagagttagatatcaatggtttcactgcaaatcagggttggaacaaaagcaaatttatgc |
35566331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University