View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_high_73 (Length: 240)

Name: NF9873_high_73
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_high_73
NF9873_high_73
[»] chr8 (4 HSPs)
chr8 (34-102)||(8472618-8472686)
chr8 (35-102)||(32593464-32593531)
chr8 (38-102)||(541761-541825)
chr8 (62-102)||(20075586-20075626)
[»] chr7 (2 HSPs)
chr7 (34-102)||(1012240-1012308)
chr7 (34-102)||(321888-321954)
[»] chr5 (2 HSPs)
chr5 (37-102)||(4446332-4446397)
chr5 (50-103)||(22160471-22160524)
[»] chr6 (2 HSPs)
chr6 (50-103)||(20592056-20592109)
chr6 (50-103)||(19314507-19314560)
[»] chr4 (2 HSPs)
chr4 (34-102)||(37078940-37079008)
chr4 (62-103)||(30666554-30666595)
[»] chr2 (2 HSPs)
chr2 (106-185)||(29393063-29393142)
chr2 (50-103)||(817075-817128)
[»] chr1 (2 HSPs)
chr1 (50-103)||(47065085-47065138)
chr1 (59-103)||(47065837-47065881)


Alignment Details
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 8472686 - 8472618
Alignment:
Q  34 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 102  Q
    |||||||| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  8472686 aagattcttaactttaacacccctcctcaagctggagcatacatgacatatgcaccaagcttgttacaa 8472618  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 32593531 - 32593464
Alignment:
Q  35 agattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 102  Q
    ||||||| |||||| ||||| ||||| |||||||| ||| |||||||| |||||||||||||||||||    
T  32593531 agattcttaattttaacacctctcctcaagctggaacatgcatgacatgtgcaccaagcttgttacaa 32593464  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 541761 - 541825
Alignment:
Q  38 ttctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 102  Q
    |||| |||||| ||||||||||| ||||||||||||   ||||||| ||||||||||||||||||    
T  541761 ttcttaattttaacacccctcctcaagctggagcatatctgacataagcaccaagcttgttacaa 541825  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 20075626 - 20075586
Alignment:
Q  62 aagctggagcattcatgacatatgcaccaagcttgttacaa 102  Q
    |||||||||||| ||||||||||||||  ||||||||||||    
T  20075626 aagctggagcatacatgacatatgcacacagcttgttacaa 20075586  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 1012308 - 1012240
Alignment:
Q  34 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 102  Q
    |||||||| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  1012308 aagattcttaactttaacacccctcctcaagctggagcatacatgacatatgcaccaagcttgttacaa 1012240  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 321954 - 321888
Alignment:
Q  34 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 102  Q
    |||||||| |||||| ||| ||||||| |||||| ||||| ||||||||  ||||||||||||||||||    
T  321954 aagattcttaattttaacatccctcctcaagctgaagcatacatgacat--gcaccaagcttgttacaa 321888  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 4446397 - 4446332
Alignment:
Q  37 attctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 102  Q
    ||||| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  4446397 attcttaactttaacacccctcctcaagctggagcatacatgacatatgcaccaagcttgttacaa 4446332  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 22160471 - 22160524
Alignment:
Q  50 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 103  Q
    |||| |||||| |||||| ||||| |||| ||||| ||||||||||||||||||    
T  22160471 acactcctcctcaagctgaagcatacatgtcatatacaccaagcttgttacaaa 22160524  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 20592056 - 20592109
Alignment:
Q  50 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 103  Q
    |||| |||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  20592056 acactcctcctcaagctggagcatacatgtcatatgcaccaagcttgttacaaa 20592109  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 19314560 - 19314507
Alignment:
Q  50 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 103  Q
    |||| |||||| |||||||||||| | || |||||||||||||||||| |||||    
T  19314560 acactcctcctcaagctggagcatacttgtcatatgcaccaagcttgtaacaaa 19314507  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 37079008 - 37078940
Alignment:
Q  34 aagattctaaattttcacacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaa 102  Q
    |||||||| || ||| ||||||||||| |||||| ||||| ||||||||||  ||||||||||||||||    
T  37079008 aagattcttaactttaacacccctcctcaagctgtagcatacatgacatataaaccaagcttgttacaa 37078940  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 30666595 - 30666554
Alignment:
Q  62 aagctggagcattcatgacatatgcaccaagcttgttacaaa 103  Q
    |||||||||||| ||||  |||||||||||||||||||||||    
T  30666595 aagctggagcatgcatgttatatgcaccaagcttgttacaaa 30666554  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 29393063 - 29393142
Alignment:
Q  106 tggccctgattttcgatcactttagcaattttctcagcaacaccgaaaccatcacctcgatgaagtgagttatcagtccc 185  Q
    ||||| |||||||||||||||| |||||||| ||||||| | || |||| |||| ||||||||| ||||  |||||||||    
T  29393063 tggccgtgattttcgatcacttcagcaatttgctcagcatcgcccaaactatcaactcgatgaactgagacatcagtccc 29393142  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 817075 - 817128
Alignment:
Q  50 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 103  Q
    |||| |||||| |||||| ||||| |||| ||||||||||||||||||||||||    
T  817075 acactcctcctcaagctgaagcatacatgtcatatgcaccaagcttgttacaaa 817128  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 47065085 - 47065138
Alignment:
Q  50 acacccctcctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 103  Q
    |||||| |||| ||||||| | || |||| ||||||||||||||||||||||||    
T  47065085 acacccttcctcaagctggggtatacatgtcatatgcaccaagcttgttacaaa 47065138  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 47065881 - 47065837
Alignment:
Q  59 ctgaagctggagcattcatgacatatgcaccaagcttgttacaaa 103  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||    
T  47065881 ctgaagctagagcatacatgtcatatgcaccaagtttgttacaaa 47065837  T

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