View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_75 (Length: 239)
Name: NF9873_high_75
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_75 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 55245660 - 55245435
Alignment:
| Q |
1 |
agaagagaggtccaggctctacatactaaagaggtgcattattatgttactatgttggcacaagtacgaacaatattaattcatttactacacaaacccc |
100 |
Q |
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| T |
55245660 |
agaagagaggtccaggctctacatactaaagaggtgcattattatgttactatgttggcacaagtacgaacaatattaattcatttactacacaatccac |
55245561 |
T |
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| Q |
101 |
actattattttttaaggtaacattaattctagtagctagtttttattattttag----tgactactatataattgtggtattggtgttgtgttatatagt |
196 |
Q |
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| T |
55245560 |
actattat-ttttaaggtaacattaattctagtagctagtttttattgttttagtgactgactactatataattgtggtattggtgttgtgttatatagt |
55245462 |
T |
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| Q |
197 |
agatatttgttagaaaaaacaacatat |
223 |
Q |
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||||||||||||||||||||||||||| |
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| T |
55245461 |
agatatttgttagaaaaaacaacatat |
55245435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 8270030 - 8269967
Alignment:
| Q |
6 |
agaggtccaggctctacatactaaagaggtgcattattatgttactatgttggcacaagtacga |
69 |
Q |
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||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
8270030 |
agaggtctaggctctatatattaaagaggtgcattattatattactatgttggcaaaagtacga |
8269967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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