View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_8 (Length: 520)
Name: NF9873_high_8
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_8 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 117 - 515
Target Start/End: Complemental strand, 38263462 - 38263080
Alignment:
| Q |
117 |
ttatttatagggccaatgaatatagatttcaaagcatataccattgtatagaaaaactattcttttatcgatagaaacataatttcaaactatgaaaagg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
38263462 |
ttatttatagggccaatgaatatagatttcaaagcatataccattatatagaaaaactattcttttatcgatag----------------tatgaaaagg |
38263379 |
T |
|
| Q |
217 |
agaatannnnnnnacaagtcttattcaaacacatatatcaatgtcaactagaaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagt |
316 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263378 |
agaatatttttttacaagtcttattcaaacacatatatcaatatcaaccagaaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagt |
38263279 |
T |
|
| Q |
317 |
aagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263278 |
aagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatc |
38263179 |
T |
|
| Q |
417 |
acagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttca |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263178 |
acagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttca |
38263080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 268 - 515
Target Start/End: Complemental strand, 38260356 - 38260109
Alignment:
| Q |
268 |
aaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattagg |
367 |
Q |
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|||| ||||||| || |||||| ||| || ||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260356 |
aaagacgataagcagggatggcaattagattattggctctaggcatagtaagaccaaaatcctctgtcatatccaaatcacttggtaacatatgattagg |
38260257 |
T |
|
| Q |
368 |
caatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaat |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| || |||||| |
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| T |
38260256 |
caatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttagacctaattgtaatccaggacaacctcttctacctgagccaaat |
38260157 |
T |
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| Q |
468 |
ggtatgagctgaaaatcacgtcctctaacatctatattgctttcttca |
515 |
Q |
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|||||||||||||||||||||||| |||||||||||||| || ||||| |
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| T |
38260156 |
ggtatgagctgaaaatcacgtcctttaacatctatattgtttccttca |
38260109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 38263526 - 38263498
Alignment:
| Q |
53 |
acagtcaaaaagagtatcttttcgcaact |
81 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38263526 |
acagtcaaaaagagtatcttttcgcaact |
38263498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 294 - 515
Target Start/End: Complemental strand, 27413677 - 27413456
Alignment:
| Q |
294 |
aaatgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaa |
393 |
Q |
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|||||||| || ||||||||||||| ||||| |||| ||||| |||||||||||||||||||||| |||||| |||||| |||||||||||||||||| |
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| T |
27413677 |
aaatgattggctctaggcatagtaataccaaatgcctcagtcatgtccaaatcacttggtaacatatcattaggtaatttcaaatcaaagcaatgcacaa |
27413578 |
T |
|
| Q |
394 |
gttgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctct |
493 |
Q |
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||| |||||||||||||| | || |||||| || || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| |||||| |
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| T |
27413577 |
tttgggccaccaccaaacgcaccatagttagacccaaatgcaatccaggacaaccccttcttccagagccaaatggtataagctgaaagtcatgtcctcc |
27413478 |
T |
|
| Q |
494 |
aacatctatattgctttcttca |
515 |
Q |
| |
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||||||||| ||| || ||||| |
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| T |
27413477 |
aacatctatgttgtttccttca |
27413456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 296 - 515
Target Start/End: Complemental strand, 7120 - 6901
Alignment:
| Q |
296 |
atgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagt |
395 |
Q |
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|||||| || ||| ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7120 |
atgattggctctacgcatagtaacaccaaatgcctctgccatgtccaaatcacttggtaacatatgattaggcaatttaaaatcaaagcaatgcacaagt |
7021 |
T |
|
| Q |
396 |
tgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaa |
495 |
Q |
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|| || ||||||||||| | || |||||| || ||||||||||||||||| |||||||| ||||| | ||||||||| || ||||||||| |||||| || |
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| T |
7020 |
tgggctaccaccaaacgcaccatagttagacccaattgcaatccaggacatccccttcttccagagctaaatggtataagttgaaaatcatgtcctccaa |
6921 |
T |
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| Q |
496 |
catctatattgctttcttca |
515 |
Q |
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||||||| ||| || ||||| |
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| T |
6920 |
catctatgttgtttccttca |
6901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 296 - 481
Target Start/End: Original strand, 6761 - 6946
Alignment:
| Q |
296 |
atgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagt |
395 |
Q |
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|||||| || ||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
6761 |
atgattggctctaggcatagtaacaccaaatgattctgtcatgtccaagtcacttggtaacatatcattaggcaatttaaaatcaaagcaatgcacaagt |
6860 |
T |
|
| Q |
396 |
tgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaa |
481 |
Q |
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|| || ||| ||||||| | || |||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| || ||||| |
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|
| T |
6861 |
tgggctaccgccaaacgcaccatagttagacctaattgcaatccaggacatccccttcttccagagccaaatggtataagatgaaa |
6946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 491
Target Start/End: Original strand, 91184 - 91238
Alignment:
| Q |
437 |
tccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcct |
491 |
Q |
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||||||||||||||||||||||| ||||| ||||| | |||||||||| ||||| |
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| T |
91184 |
tccaggacaaccccttctaccagcaccaaaaggtatcaactgaaaatcatgtcct |
91238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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