View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_81 (Length: 232)
Name: NF9873_high_81
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_81 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 41188177 - 41188403
Alignment:
| Q |
1 |
caagtattcatcattttacaaatcaaacgcaccctaaattaagaaagagaaacattttataattttaccaaactttcgataatacatgattttttaatta |
100 |
Q |
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| T |
41188177 |
caagtattcatcattttgcaaatcaaatgcaccctaaattaagaaagagaaacattttataattttaccaaactttcgataatacatgattttttaatga |
41188276 |
T |
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| Q |
101 |
aacaaaagataaaa-cacaactaatttatcattgactattaaaaatcaccgcaatgtcaaggatattatgttggtaatgtggaaacctcccactcctcct |
199 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41188277 |
aacaaaagataaaaacacaactaatttatcattgactattaaaaatcaccggaatgtcaaggatattatgttggtaatttggaaacctcccactcctcct |
41188376 |
T |
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| Q |
200 |
tgggtgaaggtgaatagagatgggtcc |
226 |
Q |
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| T |
41188377 |
tgggtgaaggtgaatagagatgggtcc |
41188403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 33313415 - 33313640
Alignment:
| Q |
1 |
caagtattcatcattttacaaatcaaacgcaccctaaattaagaaagagaaacattttataattttaccaaactttcgataatacatgattttttaatta |
100 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
33313415 |
caagtattcatcattttgcaaatcaaacacaccctaaattaagaaagagaaacattttaaaattttacaaaactttcgataatacatgattttttaatta |
33313514 |
T |
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| Q |
101 |
aacaaaagataaaa-cacaactaatttatcattgactattaaaaatcaccgcaatgtcaaggatattatgttggtaatgtggaaacctcccactcctcct |
199 |
Q |
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| T |
33313515 |
aacaaaagataaaaacacaattaatttatcattgactattaaaaatcaccgcaatgtcaaggatattatgttggtgatgtggaaacctcccactcctcct |
33313614 |
T |
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| Q |
200 |
tgggtgaaggtgaatagagatgggtc |
225 |
Q |
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| T |
33313615 |
tgggtgaaggtgaatagagatgggtc |
33313640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 13766188 - 13766257
Alignment:
| Q |
66 |
taccaaactttcgataatacatgattttttaattaaacaaaagataaaa--cacaactaatttatcattg |
133 |
Q |
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| T |
13766188 |
taccaaacttttgataatgcatgctttattaattaaacaaaagataaaaagcacaagtaatttatcattg |
13766257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 29039091 - 29039043
Alignment:
| Q |
66 |
taccaaactttcgataatacatgattttttaattaaacaaaagataaaa |
114 |
Q |
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||||||||||| |||||| |||| ||| ||||||||||||||||||||| |
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| T |
29039091 |
taccaaactttggataatgcatgctttattaattaaacaaaagataaaa |
29039043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 13755444 - 13755499
Alignment:
| Q |
59 |
ataattttaccaaactttcgataatacatgattttttaattaaacaaaagataaaa |
114 |
Q |
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|||||| ||||||||||| |||||| |||| ||| |||||||||||||||||||| |
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| T |
13755444 |
ataattctaccaaactttggataatgcatgctttactaattaaacaaaagataaaa |
13755499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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