View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_high_9 (Length: 515)
Name: NF9873_high_9
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 40678578 - 40678999
Alignment:
| Q |
1 |
aattggcaatggagttgttagagaaagagaatttgtattatgaaaatgtgatggagctagaggattatgaagagagtggtggaggagagagttctatggg |
100 |
Q |
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| T |
40678578 |
aattggcaatggagttgttagagaaagagaatttgtattatgaaaatgtgatggagctagaggattatgaagagagtggtggaggagagagttctatggg |
40678677 |
T |
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| Q |
101 |
attggaggaggataatgctggtcatggttttggtgctacatttttggcttcaaaatttgctgcaaacactaagaaaggagcagttaaaaaggtgacaatg |
200 |
Q |
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| T |
40678678 |
attggaggaggataatgctagtcatggttttggtgctacatttttggcttcaaaatttgctgcaaacactaagaaaggagcagttaaaaaggtgacaatg |
40678777 |
T |
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| Q |
201 |
atccctgatagtagcagtttaaagatgcccaagatgtttaagccaactatgcctgatttctcaacatttcatgaagattaattaattagttttgaagtct |
300 |
Q |
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| T |
40678778 |
atccctgatagtagcagtttaaagatgcccaagatgtttaagccaactatgcctgatttctcaacatttcatgaagattaattaattagttttgaagtct |
40678877 |
T |
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| Q |
301 |
catgaggactgaattatgaatgaggacaaaagtaatgcttg--------------atttgtatctaactagttgtacagaagcaatgatattttgtctcc |
386 |
Q |
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| T |
40678878 |
catgaggactgaattatgaatgaggacaaaagtaatgcttgatttgtgtttcttaatttgtatctaactagttgtacagaagcaatgatattttgtctcc |
40678977 |
T |
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| Q |
387 |
cgatt-ctttgattcccaccaa |
407 |
Q |
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| T |
40678978 |
ctattcctttgattcccaccaa |
40678999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 404 - 497
Target Start/End: Original strand, 40679042 - 40679135
Alignment:
| Q |
404 |
ccaaccatgagaatgcagcaatgttaaatctcttgagtgagagatttgttatttattgtattacctagttcaatgatttagtcttcaccgttgt |
497 |
Q |
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| T |
40679042 |
ccaaccatgagaatgcagcaatgttaaatctcttgagtgagagatttgttatttattgtattatctagttcaatgatttagtcttcaccgttgt |
40679135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 445
Target Start/End: Original strand, 3765294 - 3765334
Alignment:
| Q |
405 |
caaccatgagaatgcagcaatgttaaatctcttgagtgaga |
445 |
Q |
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| T |
3765294 |
caaccctgagaatgcagcagtgttaaatctcttgagggaga |
3765334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 13112079 - 13112029
Alignment:
| Q |
128 |
ttttggtgctacatttttggcttcaaaatttgctgcaaacactaagaaagg |
178 |
Q |
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| T |
13112079 |
ttttggtgctactgttttggcttcaagatttgctgcaaatacaaagaaagg |
13112029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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