View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_1 (Length: 1084)
Name: NF9873_low_1
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 758; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 212 - 1072
Target Start/End: Complemental strand, 32790516 - 32789650
Alignment:
| Q |
212 |
atacaatcctagatgcgtcaaattcgagctgaaattgatgctgtatccaaagctaatggcgatcgcatgaggaaaccgaagggcgacaggttatttctta |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32790516 |
atacaatcctagatgcgtcaaattcgagctgaaattggtgctgtatccaaagctaatggcgatcgcatgaggaaaccgaagggcgacaggttatttctta |
32790417 |
T |
|
| Q |
312 |
tttacctgtttaattttccagtctttttgcacgatgttgatatacatacaagtgttcatgtcagtcgataaactcaaataaatcaatatgaatggttgta |
411 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32790416 |
tttgcctgtttaattttccagtctttttgcacgatgttgatatacatacaagtgttcatgtcagtcgataaactcaaataaatcaatatgaatggttgta |
32790317 |
T |
|
| Q |
412 |
actctgttgattgttaaggtaaatcctgattttgttcacggataaagtcgacaaaactttggtaatcaaagtgctgctaaactagcttgtatgatgggtt |
511 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32790316 |
actctgttgactgttaaggtaaatcctgattttgttcacggataaagtggacaaaactttggtaatcaaagtgctgctaaactagcttgtatgatgggtt |
32790217 |
T |
|
| Q |
512 |
atggtggtttagctgcttatctttcagaaaagtctctagttgagcagcttggctggaaatatcaacttattggcaacaggcacgactgatcattgaatta |
611 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32790216 |
atggtggtttagcagcttatctttcagaaaagtctctagttgagcagcttggctggaaatatcaacttattggaaacaggcacgactgatcattgaatta |
32790117 |
T |
|
| Q |
612 |
tgataatcttaccagggaccagctgattatgaaggaacctttagcagaaacatggcgtggagattatgcgtgggaattgttaagatctaccattatagtt |
711 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32790116 |
tgataatcttaccagggaccagctgattctgaaggaaactttagcagaaacatggcgtggagattatgcgtgggaattgttaagatctaccattatagtt |
32790017 |
T |
|
| Q |
712 |
atttagttaatgagagaagttaagtagttagaacttagaagggaagctagtaagagaagttaagtagtttgagagggtatcgtgtataaaatataaatag |
811 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |
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| T |
32790016 |
atttagttaatgagagaagttaagtagttagaacttagaagggaagctagtaagagaagtttagtagtttgagaggatatcgtgtataaaacataaatag |
32789917 |
T |
|
| Q |
812 |
gataaataaggatga-cgagggatctggtacatttgtttgttgtattttgaatggataaagtagcagccctttgtgaaagggataccattagaggagagt |
910 |
Q |
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| T |
32789916 |
gataaataaggatgagcgagggatctggtacatttgtttgttgtattttgaatggataaagtagcagccctttgtgaaagggataccattagaggagagt |
32789817 |
T |
|
| Q |
911 |
---ctcctattttcattctttaaataaaac--nnnnnnnncttttcatttctttctattgattctccatccattgtcctttgttcgcaacagacgtggtg |
1005 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
32789816 |
ctcctcctattttcattctttaaataaaacttttttttttcttttcatttctttctattgattctccatccattgtcctttgttcgtaacagacctggtg |
32789717 |
T |
|
| Q |
1006 |
ctcaatgttttagacatagattgtcccgcattttgtgtttcagagtttgttaaattggttcttcttg |
1072 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32789716 |
ctcaatgttttagacatagattgtcccgcattttgtgtttcagagtttgttaaattggttcttcttg |
32789650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 32790717 - 32790584
Alignment:
| Q |
8 |
gaagcaaaggacaaagtatcgcaaaacaacaatgccttcacaaatttatttgaatttgaaaaccaaaaaatggaatacgtgagcccagaaggacttcgct |
107 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32790717 |
gaagcaaaggacaaagtatcgcaaaacaacattgccttcacaattttttttgaatttgaacaccaaaaaatggaatacgtgagcccagaaggacttcgct |
32790618 |
T |
|
| Q |
108 |
tggatggtcgcagtcgcagacccatggaagtaggtactac |
147 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
32790617 |
tggatggtc------gcagacccatggaagtaggtactac |
32790584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 2e-43; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 462 - 678
Target Start/End: Complemental strand, 48283315 - 48283083
Alignment:
| Q |
462 |
acaaaactttggtaatcaaagtgctgctaaactagcttgtatgatgggttatggtggtttagctgcttatctttcagaaaagtctctagttgagcagct- |
560 |
Q |
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||||||| |||||| ||||||||||| || || |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48283315 |
acaaaaccctggtaaacaaagtgctgccaaccttgcttgtatgacgggttattatggtttagcagcttatctttcagaaaagtctctagttgagcagctc |
48283216 |
T |
|
| Q |
561 |
------------tggctggaaatatcaac---ttattggcaacaggcacgactgatcattgaattatgataatcttaccagggaccagctgattatgaag |
645 |
Q |
| |
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| ||||||||||| ||| ||||||| |||||||||| |||||||||||| | ||| || ||||||||||||||||||||| ||||| |
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| T |
48283215 |
aatacatgagcttagctggaaatattaacggtttattggaaacaggcacggctgatcattgaactctgagaaccttaccagggaccagctgattttgaag |
48283116 |
T |
|
| Q |
646 |
gaacctttagcagaaacatggcgtggagattat |
678 |
Q |
| |
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||||||||||||||||||||| | ||||||||| |
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| T |
48283115 |
gaacctttagcagaaacatggtgaggagattat |
48283083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 48283734 - 48283665
Alignment:
| Q |
272 |
gatcgcatgaggaaaccgaagggcgacaggttatttcttatttacctgtttaattttccagtctttttgc |
341 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
48283734 |
gatcgcatgaggaaaccaaagggcgacaggttatttcttatttacttgtttaatttcccagtctttttgc |
48283665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 48284308 - 48284253
Alignment:
| Q |
215 |
caatcctagatgcgtcaaattcgagctgaaattgatgctgtatccaaagctaatgg |
270 |
Q |
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|||||||||||||| ||||||||||| || |||| |||||||||||||||| |||| |
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| T |
48284308 |
caatcctagatgcgacaaattcgagcagagattggtgctgtatccaaagctgatgg |
48284253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 687 - 744
Target Start/End: Complemental strand, 48283032 - 48282975
Alignment:
| Q |
687 |
attgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaa |
744 |
Q |
| |
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||||||| |||||| | |||||||||||||||||| ||| ||||||| ||||||||| |
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|
| T |
48283032 |
attgttaggatctatccttatagttatttagttaagaagataagttaactagttagaa |
48282975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 558
Target Start/End: Original strand, 50271416 - 50271467
Alignment:
| Q |
507 |
gggttatggtggtttagctgcttatctttcagaaaagtctctagttgagcag |
558 |
Q |
| |
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||||||| ||| ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
50271416 |
gggttatcatggcttagcagcttatctttcggaaaagtctctagttgagcag |
50271467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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