View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_100 (Length: 229)
Name: NF9873_low_100
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_100 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 53329397 - 53329170
Alignment:
| Q |
7 |
ttaactccactaaatttcaaaatcaagaatcaattgggataaatttgaaagatttcacaacttaatacagaacgggtttacaaagaaaacaacctgcttt |
106 |
Q |
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| T |
53329397 |
ttaactccactaaatttcaaaatcaagaattaattgggataaatttgaaagatttcacaacttactacagtacgggtttacaaagaaaacaacctgc-tt |
53329299 |
T |
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| Q |
107 |
ttagatacttactttcgatctaaaacatcaat------attcaatgtcaaaatagcattcaatttaggaaccgcagtgttaggttcaactagttatggat |
200 |
Q |
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| T |
53329298 |
taagatacttactttcgatctaaaacatcaatattcaaattcaatgtcaaaatagcattcaatttaggaaccgcagtgttaggttcaactagttatggat |
53329199 |
T |
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| Q |
201 |
tagactagtaaatcaatattcaatgtaca |
229 |
Q |
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| T |
53329198 |
tagactagtaaatcaatattcaatttaca |
53329170 |
T |
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