View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_low_101 (Length: 229)

Name: NF9873_low_101
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_low_101
NF9873_low_101
[»] chr7 (2 HSPs)
chr7 (90-229)||(8693353-8693492)
chr7 (17-67)||(27471028-27471078)
[»] chr3 (32 HSPs)
chr3 (90-225)||(28183862-28183997)
chr3 (90-220)||(28147829-28147959)
chr3 (130-222)||(27392260-27392352)
chr3 (128-222)||(28159336-28159430)
chr3 (90-220)||(28510701-28510831)
chr3 (130-216)||(28002313-28002399)
chr3 (90-216)||(28132045-28132171)
chr3 (90-216)||(28481533-28481659)
chr3 (90-222)||(11418826-11418958)
chr3 (88-220)||(26210120-26210252)
chr3 (129-229)||(27918506-27918606)
chr3 (137-220)||(26115012-26115095)
chr3 (142-220)||(28081890-28081968)
chr3 (142-216)||(27461076-27461150)
chr3 (90-200)||(28481909-28482019)
chr3 (90-222)||(17746197-17746329)
chr3 (90-222)||(19047517-19047649)
chr3 (132-216)||(27347551-27347635)
chr3 (90-222)||(27975447-27975579)
chr3 (97-222)||(12146126-12146251)
chr3 (88-220)||(26237364-26237496)
chr3 (100-222)||(26131590-26131712)
chr3 (137-222)||(26180627-26180712)
chr3 (142-216)||(18026500-18026574)
chr3 (97-190)||(27376309-27376402)
chr3 (90-190)||(28147637-28147737)
chr3 (9-76)||(28001678-28001745)
chr3 (137-222)||(26142322-26142407)
chr3 (90-190)||(28481751-28481851)
chr3 (146-217)||(28035579-28035650)
chr3 (153-192)||(27457030-27457069)
chr3 (7-38)||(28183238-28183269)
[»] chr2 (2 HSPs)
chr2 (89-222)||(8019855-8019988)
chr2 (130-190)||(22391264-22391324)
[»] scaffold0257 (1 HSPs)
scaffold0257 (90-222)||(17424-17556)
[»] scaffold0043 (1 HSPs)
scaffold0043 (133-222)||(54751-54840)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 90 - 229
Target Start/End: Complemental strand, 8693492 - 8693353
Alignment:
Q  90 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagct 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8693492 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaacgagcttcctgagct 8693393  T
Q  190 aaatgttctgatcataagagaagcagatgagctggatgaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8693392 aaatgttctgatcataagagaagcagatgagctggatgaa 8693353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 27471078 - 27471028
Alignment:
Q  17 tctcctgtaacaataatagcatcaccataaacaacaagtacaattagtttt 67  Q
    |||||| ||||||||||| ||||| ||||||||| ||||||||| ||||||    
T  27471078 tctcctataacaataatatcatcaacataaacaataagtacaatcagtttt 27471028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 28183862 - 28183997
Alignment:
Q  90 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagct 189  Q
    ||||||||| ||||||||||||||||    |||| ||   ||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  28183862 caaagacattcttcccaaagctagaaaaagttgttgtagaaaagtgcaacaagttgaaatatgtgtttccaatctccatatgtaaagagcttcctgagct 28183961  T
Q  190 aaatgttctgatcataagagaagcagatgagctgga 225  Q
    |||||||||||| |||||||||||||||||||||||    
T  28183962 aaatgttctgatgataagagaagcagatgagctgga 28183997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 220
Target Start/End: Original strand, 28147829 - 28147959
Alignment:
Q  90 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagct 189  Q
    |||||||||||||||||||||||  |   ||||| |||  ||||||| ||| |||||||||||| |||||| ||||||||| ||||||||||||||||||    
T  28147829 caaagacatgcttcccaaagctaagaatacttgttgtggaaaagtgcaacaagttgaaatatgtgtttccaatctccatatctaaagagcttcctgagct 28147928  T
Q  190 aaatgttctgatcataagagaagcagatgag 220  Q
    ||| |||||||||||||||||||||||||||    
T  28147929 aaaggttctgatcataagagaagcagatgag 28147959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 27392352 - 27392260
Alignment:
Q  130 aaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcagatgagct 222  Q
    ||||||| | |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27392352 aaagtgcaaaatgttgaaatatgtgtttccaatctccatatgtaaagagcttcctgagctaaaggttctgatcataagagaagcagatgagct 27392260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 28159336 - 28159430
Alignment:
Q  128 ataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcagatgagct 222  Q
    ||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  28159336 ataaagtgcaacaagttgaaatatgtatttccaatctccatatgtaaagagcttcctgagctaaatgttctgatgataagagaatcagatgagct 28159430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 28510831 - 28510701
Alignment:
Q  90 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagct 189  Q
    ||||||||||||||||||| |||  |   ||||| ||  |||||||| ||| ||||||||||||||||||| ||||||||| |||||||||||| |||||    
T  28510831 caaagacatgcttcccaaaactaagaatacttgttgtagtaaagtgcaacaagttgaaatatgtctttccaatctccatatctaaagagcttccagagct 28510732  T
Q  190 aaatgttctgatcataagagaagcagatgag 220  Q
    || ||||||||||||||||||||||||||||    
T  28510731 aattgttctgatcataagagaagcagatgag 28510701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 28002313 - 28002399
Alignment:
Q  130 aaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcaga 216  Q
    ||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28002313 aaagtgcaacaagttgaaatatgtgtttccaatctccatatgtaaagagcttcctgagctaaatgttctgaccataagagaagcaga 28002399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 28132045 - 28132171
Alignment:
Q  90 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagct 189  Q
    |||||||||||||||||||| || ||  | |||| ||  |||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  28132045 caaagacatgcttcccaaagttaaaaatggttgttgtagtaaagtgcaacaagttgaaatatgtctttccaatctccgtatgtaaagagcttcctgagct 28132144  T
Q  190 aaatgttctgatcataagagaagcaga 216  Q
    | ||  |||||||||||||||||||||    
T  28132145 atattatctgatcataagagaagcaga 28132171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 28481659 - 28481533
Alignment:
Q  90 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagct 189  Q
    |||||||||||||||||||||||  ||  ||||| |||  ||||||| ||| |||||||||||| |||||| ||||||||| ||||||||||||  ||||    
T  28481659 caaagacatgcttcccaaagctaacactacttgttgtggaaaagtgcaacaagttgaaatatgtgtttccaatctccatatctaaagagcttccaaagct 28481560  T
Q  190 aaatgttctgatcataagagaagcaga 216  Q
    ||||||||| |||||||||||||||||    
T  28481559 aaatgttctcatcataagagaagcaga 28481533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 11418826 - 11418958
Alignment:
Q  90 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagct 189  Q
    ||||||||||||||||||||||| ||   ||||| ||   ||||||| ||| |||||||||||| |||||| ||||| | ||||||||||||||||||||    
T  11418826 caaagacatgcttcccaaagctaaaaacacttgttgtagcaaagtgcaacaagttgaaatatgtttttccaatctccctgtgtaaagagcttcctgagct 11418925  T
Q  190 aaatgttctgatcataagagaagcagatgagct 222  Q
    | |||||||||| |||||||| |||||||||||    
T  11418926 atatgttctgatgataagagacgcagatgagct 11418958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 88 - 220
Target Start/End: Complemental strand, 26210252 - 26210120
Alignment:
Q  88 ttcaaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgag 187  Q
    |||||| |||| ||||||||||||||||   || || || | ||| || |||| |||||||||||| |||||||||||||| ||||||||| ||||||||    
T  26210252 ttcaaacacattcttcccaaagctagaaacactggttgtaacaaaatgtgacaagttgaaatatgtgtttccagtctccatttgtaaagagtttcctgag 26210153  T
Q  188 ctaaatgttctgatcataagagaagcagatgag 220  Q
    ||||||||| |||| |||||||||||| |||||    
T  26210152 ctaaatgttatgataataagagaagcaaatgag 26210120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 27918506 - 27918606
Alignment:
Q  129 taaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcagatgagctggatga 228  Q
    |||||||| ||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||   |||  | ||||||||||||||||||||||||||    
T  27918506 taaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagaccttcctgagctaaagtgtctagtgataagagaagcagatgagctggatga 27918605  T
Q  229 a 229  Q
    |    
T  27918606 a 27918606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 26115095 - 26115012
Alignment:
Q  137 gacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcagatgag 220  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||| |||||    
T  26115095 gacaagttgaaatatgtctttccagtctccatttgtaaagagcttcctgagctaaaggttatgataataagagaagcaaatgag 26115012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 28081890 - 28081968
Alignment:
Q  142 gttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcagatgag 220  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  28081890 gttgaaatatgtctttccaatctccgtatataaagagcttcctgagctaaattatctgatcataagagaagcagatgag 28081968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 27461150 - 27461076
Alignment:
Q  142 gttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcaga 216  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||| |||||||||||||||||    
T  27461150 gttgaaatatgtctttccaatgtccatatgtaaagagcttcctgagctagaggttctaatcataagagaagcaga 27461076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 28482019 - 28481909
Alignment:
Q  90 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagct 189  Q
    |||||| |||||||||||||||| ||   ||||||||  |||||||| ||| |||||||||||| |||||| |||||||||||||||| |||||||||||    
T  28482019 caaagatatgcttcccaaagctacaaatacttgtagtagtaaagtgcaacaagttgaaatatgtgtttccaatctccatatgtaaagaccttcctgagct 28481920  T
Q  190 aaatgttctga 200  Q
    | ||| |||||    
T  28481919 atatgatctga 28481909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 222
Target Start/End: Complemental strand, 17746329 - 17746197
Alignment:
Q  90 caaagacatgcttcccaaagcta-gaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagc 188  Q
    ||||||||||||||||||||||| ||||  ||||  |||  ||||||| ||| ||||  ||||||||||||| |||||||||||||||||||||||||||    
T  17746329 caaagacatgcttcccaaagctaagaaca-cttgctgtgcaaaagtgcaacaagttgttatatgtctttccaatctccatatgtaaagagcttcctgagc 17746231  T
Q  189 taaatgttctgatcataagagaagcagatgagct 222  Q
    || | | ||| || |||||||||||| |||||||    
T  17746230 tagagggtctaatgataagagaagcatatgagct 17746197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 222
Target Start/End: Complemental strand, 19047649 - 19047517
Alignment:
Q  90 caaagacatgcttcccaaagcta-gaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagc 188  Q
    ||||||||||||||||||||||| ||||  ||||  |||  ||||||| ||| ||||  ||||||||||||| |||||||||||||||||||||||||||    
T  19047649 caaagacatgcttcccaaagctaagaaca-cttgctgtgcaaaagtgcaacaagttgttatatgtctttccaatctccatatgtaaagagcttcctgagc 19047551  T
Q  189 taaatgttctgatcataagagaagcagatgagct 222  Q
    || | | ||| || |||||||||||| |||||||    
T  19047550 tagagggtctaatgataagagaagcatatgagct 19047517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 27347551 - 27347635
Alignment:
Q  132 agtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcaga 216  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||| | | ||| |||||||||||| ||||    
T  27347551 agtgcaacatgttgaaatatgtgtttccaatctccatatgtaaagagcttcctgagctagaggctctaatcataagagaatcaga 27347635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 27975447 - 27975579
Alignment:
Q  90 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagct 189  Q
    |||||||||||||||||||| || ||   ||||| || | || |||| ||| |||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  27975447 caaagacatgcttcccaaagttaaaaacacttgttgtaaaaaggtgcaacaagttgaaatatgtgtttccaatctccatatgtaaagagcttcttgagct 27975546  T
Q  190 aaatgttctgatcataagagaagcagatgagct 222  Q
    | | |||||  | ||||||||||||| ||||||    
T  27975547 agaggttctcttgataagagaagcagctgagct 27975579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 12146126 - 12146251
Alignment:
Q  97 atgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgtt 196  Q
    |||||||||||||||| ||   ||||| || | || |||| | ||||| |||||||| |||||| ||||||||||||||||||||||||||||| |  ||    
T  12146126 atgcttcccaaagctaaaaacacttgtggtaaaaaggtgcaaaatgttaaaatatgtgtttccaatctccatatgtaaagagcttcctgagctacagttt 12146225  T
Q  197 ctgatcataagagaagcagatgagct 222  Q
    || || |||||||||||| |||||||    
T  12146226 ctaattataagagaagcaaatgagct 12146251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 220
Target Start/End: Complemental strand, 26237496 - 26237364
Alignment:
Q  88 ttcaaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgag 187  Q
    |||||| |||| ||||||||||||||||   ||  | || | ||| || |||| |||||||||| | |||||||||||||| ||||||||| ||||||||    
T  26237496 ttcaaacacattcttcccaaagctagaaacactaattgtaacaaaatgtgacaagttgaaatatatgtttccagtctccatttgtaaagagtttcctgag 26237397  T
Q  188 ctaaatgttctgatcataagagaagcagatgag 220  Q
    ||||| ||| || |||||||||||||| |||||    
T  26237396 ctaaaggttatgttcataagagaagcaaatgag 26237364  T

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Target: chr3; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 26131712 - 26131590
Alignment:
Q  100 cttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctg 199  Q
    ||||||||||||||||   || || || | ||| || |||| |||||| |||||||||||||||||||| ||||||||| ||||| ||||||| ||| ||    
T  26131712 cttcccaaagctagaaacactggttgtaacaaaatgtgacaagttgaagtatgtctttccagtctccatttgtaaagagtttcctaagctaaaggttatg 26131613  T
Q  200 atcataagagaagcagatgagct 222  Q
    || ||||| |||||| |||||||    
T  26131612 atgataagtgaagcaaatgagct 26131590  T

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Target: chr3; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 26180712 - 26180627
Alignment:
Q  137 gacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcagatgagct 222  Q
    |||| |||||| ||||| |||||||||||||| ||||||||| ||||||||||||| ||| || | |||||||||||| |||||||    
T  26180712 gacaagttgaagtatgtgtttccagtctccatttgtaaagagtttcctgagctaaaggttatgttgataagagaagcaaatgagct 26180627  T

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Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 18026574 - 18026500
Alignment:
Q  142 gttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcaga 216  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||| | ||||||  |||||||||    
T  18026574 gttgaaaaatgtctttccaatctccatatataaagagcttcctgagctaaaggttataatcatagtagaagcaga 18026500  T

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Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 27376309 - 27376402
Alignment:
Q  97 atgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagcta 190  Q
    |||||||||||||||| ||   ||||| || | || |||| | ||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  27376309 atgcttcccaaagctacaaacacttgtggtaagaatgtgcaaaatgttgaaaaatgtctttccaatctccatatgtgaagagcttcctgagcta 27376402  T

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Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 28147637 - 28147737
Alignment:
Q  90 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagct 189  Q
    ||||||||||||||||||| ||| || |  |||| || ||||||||| ||| |||||||||||||||| || | ||||||| |||||| ||||||| |||    
T  28147637 caaagacatgcttcccaaatctaaaaagaattgttgtaataaagtgcaacaagttgaaatatgtcttttcaatttccatatataaagaccttcctgcgct 28147736  T
Q  190 a 190  Q
    |    
T  28147737 a 28147737  T

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Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 28001678 - 28001745
Alignment:
Q  9 ataaatcatctcctgtaacaataatagcatcaccataaacaacaagtacaattagttttcttagattc 76  Q
    |||||||||||| |||||||| |||| ||||| ||||||||| ||||| ||||||||||| |||||||    
T  28001678 ataaatcatctcatgtaacaacaatatcatcaacataaacaaaaagtataattagttttcctagattc 28001745  T

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Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 26142407 - 26142322
Alignment:
Q  137 gacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcagatgagct 222  Q
    |||| |||||| |||||||||||| ||||||| ||||||||| ||||| ||||||| | | || | |||||||||||| |||||||    
T  26142407 gacaagttgaagtatgtctttccaatctccatttgtaaagagtttcctaagctaaaggctgtgttgataagagaagcaaatgagct 26142322  T

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Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 28481851 - 28481751
Alignment:
Q  90 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagct 189  Q
    |||||||||||||||||||||||  |   ||||  ||  |||||||| ||| |||||||||||||||| || | |||||||||||||| ||||||| |||    
T  28481851 caaagacatgcttcccaaagctaagaatacttggtgtagtaaagtgcaacaagttgaaatatgtcttttcaatttccatatgtaaagaccttcctgcgct 28481752  T
Q  190 a 190  Q
    |    
T  28481751 a 28481751  T

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Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 28035579 - 28035650
Alignment:
Q  146 aaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcagat 217  Q
    ||||||||||||||| ||||||||||||||||||||||  || || | | ||| || |||||||||||||||    
T  28035579 aaatatgtctttccaatctccatatgtaaagagcttcccaagttagaagctctaatgataagagaagcagat 28035650  T

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Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 27457069 - 27457030
Alignment:
Q  153 tctttccagtctccatatgtaaagagcttcctgagctaaa 192  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  27457069 tctttccagtctccataactaaagagcttcctgagctaaa 27457030  T

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Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 28183238 - 28183269
Alignment:
Q  7 aaataaatcatctcctgtaacaataatagcat 38  Q
    ||||||||||||||||||||||||||||||||    
T  28183238 aaataaatcatctcctgtaacaataatagcat 28183269  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 8019855 - 8019988
Alignment:
Q  89 tcaaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagc 188  Q
    ||||| |||||||| |||||||||| |   ||||| ||  ||||||||  || ||||||  ||||||||||| |||||||||||||||||||||||||||    
T  8019855 tcaaaaacatgctttccaaagctaggaactcttgttgtagtaaagtgcatcaagttgaaccatgtctttccaatctccatatgtaaagagcttcctgagc 8019954  T
Q  189 taaatgttctgatcataagagaagcagatgagct 222  Q
    |||||  ||||||||||||||||||| |||||||    
T  8019955 taaattatctgatcataagagaagcatatgagct 8019988  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 22391264 - 22391324
Alignment:
Q  130 aaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagcta 190  Q
    ||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  22391264 aaagtgcaaaatgttaaaatatgtctttccaatctccatatgtaaagagcttcctgagcta 22391324  T

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Target: scaffold0257 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 17424 - 17556
Alignment:
Q  90 caaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagct 189  Q
    |||||| |||||||||||||||| ||   ||||  ||  |||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  17424 caaagatatgcttcccaaagctacaatctcttgctgtagtaaagtgcaacaagttgaaatatgtgtttccaatctccatatgtaaagagcttcctgagct 17523  T
Q  190 aaatgttctgatcataagagaagcagatgagct 222  Q
    |||   |||  | ||||||||||||||||||||    
T  17524 aaagtgtctagtgataagagaagcagatgagct 17556  T

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Target: scaffold0043 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 54840 - 54751
Alignment:
Q  133 gtgcgacatgttgaaatatgtctttccagtctccatatgtaaagagcttcctgagctaaatgttctgatcataagagaagcagatgagct 222  Q
    |||| ||| |||| || ||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||    
T  54840 gtgcaacaagttggaaaatgtctttccaatctccatatgtaaagagcttcctgagctagatgctctaatcataagagaagcacatgagct 54751  T

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