View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_105 (Length: 220)
Name: NF9873_low_105
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_105 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 676448 - 676598
Alignment:
| Q |
14 |
caaaggtaacaaattttgatgaaagccctatttgtatatgtactactataacatgtcctacatattgctcttgacattctttagtggcttttttctgatc |
113 |
Q |
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| T |
676448 |
caaaggtaacaaattttgatgaaagccctatttgtatatgtactactataacatgtcctacatattgctcttgacattctttagtggcttttttctgatc |
676547 |
T |
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| Q |
114 |
tattctttctttgagtaacaaattatctttcttctttaatcttaccctaaa |
164 |
Q |
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| T |
676548 |
tattctttctttgagtaacaaattatctttcttctttaatcttaccctaaa |
676598 |
T |
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