View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_low_107 (Length: 214)

Name: NF9873_low_107
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_low_107
NF9873_low_107
[»] chr3 (2 HSPs)
chr3 (37-119)||(15994984-15995066)
chr3 (131-184)||(15995203-15995256)
[»] chr2 (2 HSPs)
chr2 (131-184)||(38951098-38951151)
chr2 (70-119)||(38950912-38950961)


Alignment Details
Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 15994984 - 15995066
Alignment:
Q  37 ataaacaaagaaacttcaattatgtatgtaacgggaacaatagatgttggaagtagataaatcaagtagcaagtagaagaatt 119  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15994984 ataaacaaagaaacttcaattatgtatgcaacaggaacaatagatgttggaagtagataaataaagtagcaagtagaagaatt 15995066  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 15995203 - 15995256
Alignment:
Q  131 ttatatgttaagtatggagacatacaaataatgcattcttgtattatgctaaaa 184  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  15995203 ttatatgttaagtatggaggcctacaaataatgcattcttgtattatgctaaaa 15995256  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 38951098 - 38951151
Alignment:
Q  131 ttatatgttaagtatggagacatacaaataatgcattcttgtattatgctaaaa 184  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  38951098 ttatatgttaagtatggaggcctacaaataatgcattcttgtattatggtaaaa 38951151  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 38950912 - 38950961
Alignment:
Q  70 ggaacaatagatgttggaagtagataaatcaagtagcaagtagaagaatt 119  Q
    |||||||| |||||||||||||||||||| |||||| |||||||||||||    
T  38950912 ggaacaatcgatgttggaagtagataaataaagtagtaagtagaagaatt 38950961  T

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