View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9873_low_12 (Length: 495)

Name: NF9873_low_12
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9873_low_12
NF9873_low_12
[»] chr5 (2 HSPs)
chr5 (176-479)||(15801926-15802229)
chr5 (8-147)||(15802258-15802397)
[»] chr8 (8 HSPs)
chr8 (8-143)||(3392245-3392380)
chr8 (8-143)||(3363504-3363639)
chr8 (8-146)||(3314192-3314328)
chr8 (294-468)||(3392537-3392710)
chr8 (294-468)||(3363173-3363347)
chr8 (240-293)||(3363373-3363425)
chr8 (240-292)||(3392459-3392510)
chr8 (413-471)||(3313800-3313861)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 176 - 479
Target Start/End: Complemental strand, 15802229 - 15801926
Alignment:
Q  176 ggaatccttaacttgctatttggtaactaaaaagcaacacataaaatttctgcttaaacccttacccaatcatatataaaatgacatttttctcatgaac 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15802229 ggaatccttaacttgctatttggtaactaaaaagcaacacataaaatttctgcttaaacccttacccaatcatatataaaatgacatttttctcatgaac 15802130  T
Q  276 taacttctccaaaaactttggacaaacacttgtgagatgatgaatcccacaattttcagccaatagatgggaaaagtnnnnnnncatttctgaaacatag 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  15802129 taacttctccaaaaactttggacaaacacttgtgagatgatgaatcccacaattttcagccaatagatgggaaaagtaaaaaaacatttctgaaacatag 15802030  T
Q  376 ttttatttttatcttcaaagatcgtgaaggatgacaaaaattcaaaatgcaatgtagaattcttacggtttgttcggccagtacatcaactacatcttca 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15802029 ttttatttttatcttcaaagatcgtgaaggatgacaaaaattcaaaatgcaatgtagaattcttacggtttgttcggccagtacatcaactacatcttca 15801930  T
Q  476 aaac 479  Q
    ||||    
T  15801929 aaac 15801926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 15802397 - 15802258
Alignment:
Q  8 acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct 107  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15802397 acattatcaagttgcaacaatcgcaatttcttcattttcttaagagcaattgtattgaagcaaactctactggtcctttgcgacttcaaaaccaatccct 15802298  T
Q  108 cgatggcttttgttccctgtaacacaaagaaagaccatag 147  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  15802297 cgatggcttttgttccctgtgacacaaagaaagaccatag 15802258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 3392245 - 3392380
Alignment:
Q  8 acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct 107  Q
    |||| ||||||||||||||||| |||| |||||||||||| ||||||||||||||  |||||||||||| ||||| || ||||||||| |||||||||||    
T  3392245 acattatcaagttgcaacaatctcaatctcttcattttctcaaaagcaattgtatcaaagcaaactctattggtctttggcaacttcataaccaatccct 3392344  T
Q  108 cgatggcttttgttccctgtaacacaaagaaagacc 143  Q
    |||||||||||||||||||| |||||||||||||||    
T  3392345 cgatggcttttgttccctgtgacacaaagaaagacc 3392380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 3363639 - 3363504
Alignment:
Q  8 acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct 107  Q
    |||| ||||||||||||||||| |||| |  ||||||||| ||||||||||||||  |||||||||||| ||||| || ||||||||| |||||||||||    
T  3363639 acattatcaagttgcaacaatctcaatctaatcattttctcaaaagcaattgtatcaaagcaaactctattggtctttggcaacttcataaccaatccct 3363540  T
Q  108 cgatggcttttgttccctgtaacacaaagaaagacc 143  Q
    |||||||||||||||||||| |||||||||||||||    
T  3363539 cgatggcttttgttccctgtgacacaaagaaagacc 3363504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 3314328 - 3314192
Alignment:
Q  8 acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct 107  Q
    |||| ||||||||||||||||| |||| |||||||||||| |||| | |||| || ||| | ||||||||||| |||||||||||||| |||||||||||    
T  3314328 acatgatcaagttgcaacaatctcaatctcttcattttctcaaaaccgattgcatcgaaaccaactctactggacctttgcaacttcataaccaatccct 3314229  T
Q  108 cgatggcttttgttccctgtaacacaaagaaagaccata 146  Q
    |||||||||||||||||||| ||||  ||||||||||||    
T  3314228 cgatggcttttgttccctgtgacac--agaaagaccata 3314192  T

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Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 294 - 468
Target Start/End: Original strand, 3392537 - 3392710
Alignment:
Q  294 tggacaaacacttgtgagatgatgaatcccacaattttcagccaatagatgggaaaagtnnnnnnncatttctgaaacatagttttatttttatcttcaa 393  Q
    |||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||||       |||||||||||||||||||  || ||||||| ||    
T  3392537 tggacagacacatgtgagataatgaatcccacaattttcagccaatagattggaaaagt--aaatacatttctgaaacatagttt--ttgttatctttaa 3392632  T
Q  394 agatcgtgaaggatgacaaaaattcaaaatgcaatgtag---aattcttacggtttgttcggccagtacatcaactac 468  Q
    |||| ||||| ||||||||| ||||||||| ||||||||   |||||||||||| || ||  ||||||||| ||||||    
T  3392633 agatagtgaaagatgacaaacattcaaaatacaatgtagagaaattcttacggtatggtcttccagtacattaactac 3392710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 468
Target Start/End: Complemental strand, 3363347 - 3363173
Alignment:
Q  294 tggacaaacactt-gtgagatgatgaatcccacaattttcagccaatagatgggaaaagtnnnnnnncatttctgaaacatagttttatttttatcttca 392  Q
    |||||| |||||| |||| || ||||||||||||||||||||||||||||| |||||| |       ||||||||||||||||||||  | ||||||| |    
T  3363347 tggacagacacttagtgaaataatgaatcccacaattttcagccaatagattggaaaattaaaaa--catttctgaaacatagtttt--tgttatcttta 3363252  T
Q  393 aagatcgtgaaggatgacaaaaattcaaaatgcaatgta---gaattcttacggtttgttcggccagtacatcaactac 468  Q
    ||||| |||||  ||||||||| ||||||||||||||||    |||||||||||| |  || |||||||||| ||||||    
T  3363251 aagatagtgaaaaatgacaaaagttcaaaatgcaatgtactgaaattcttacggtatagtctgccagtacattaactac 3363173  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 3363425 - 3363373
Alignment:
Q  240 cccaatcatatataaaatgacatttttctcatgaactaacttctccaaaaactt 293  Q
    |||||| ||||||||||||||||  ||||||||||||||| |||||||||||||    
T  3363425 cccaattatatataaaatgacatcattctcatgaactaac-tctccaaaaactt 3363373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 3392459 - 3392510
Alignment:
Q  240 cccaatcatatataaaatgacatttttctcatgaactaacttctccaaaaact 292  Q
    |||||| ||||||||||||||||  ||||||||||||||| ||||||||||||    
T  3392459 cccaattatatataaaatgacatcattctcatgaactaac-tctccaaaaact 3392510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 471
Target Start/End: Complemental strand, 3313861 - 3313800
Alignment:
Q  413 aaattcaaaatgcaatgtaga---attcttacggtttgttcggccagtacatcaactacatc 471  Q
    |||||||||||||||||||||   |||||||| || || |||| ||||||||||||||||||    
T  3313861 aaattcaaaatgcaatgtagataaattcttacagtatggtcggtcagtacatcaactacatc 3313800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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