View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_17 (Length: 481)
Name: NF9873_low_17
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 47352721 - 47352241
Alignment:
| Q |
1 |
ggaagttaaggtgggagtaaattagtgaagtgagttcatcaaagaaaaataagttgttatttgtttgtttcaaaaggttaaggttttaggtggaggatgg |
100 |
Q |
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| T |
47352721 |
ggaagttaaggtgggagtaaattagtgaagtgagttcatcaaagaaaaataagttgttatttgtttgtttcaaaaggttaaggttttaggtggaggatgg |
47352622 |
T |
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| Q |
101 |
atattttctgatgatcaaaggggaggggaagagacggtagagagtgggatagaggagagagaaaggcaatttggtgaggttgatgcataataaaattagt |
200 |
Q |
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| T |
47352621 |
atattttctgatgatcaaaggggaggggaagagacggtagagagtgggatagaggagagagaaaggcaatttggtgaggttgatgcataataaaatttgt |
47352522 |
T |
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| Q |
201 |
tagctcaattaaaccaacagtctagaaataatgatttctgtagatcaactaatactgtggtcaaccatagattttaccttgatgtagaggtcctagaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47352521 |
tagctcaattaaaccaacagtctagaaataatgatttctgtagaccaactaatactgtggtcaaccatagattttgccttgatgtagaggtcctagaaat |
47352422 |
T |
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| Q |
301 |
taacatacaagatactggttttggaggaaaatcgttagccatatcatatagcaaccctagccattaaatgctgaaaattgaaattaatagaaagagagaa |
400 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47352421 |
taacatacatgatactggttttggaggaaaatcgttagccatatcatatagaaaccctagccattaaatgctgaaaattgaaattaatagaaagagagaa |
47352322 |
T |
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| Q |
401 |
ggaagcaagattcatgagtatcatacctgcaccaagacccaagaagttcaatggcatacctgtgcaccagataaagataaa |
481 |
Q |
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| T |
47352321 |
ggaagcaagattcatgagtatcatacctgcaccaagacccaagaagttcaatggcatacctgtgcaccagataaagataaa |
47352241 |
T |
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