View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_19 (Length: 463)
Name: NF9873_low_19
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Complemental strand, 44041399 - 44040978
Alignment:
| Q |
15 |
aagggtgggagagctgtagcttatgccagtgaatacacaattctgcatgatagttatgctgcaaatttccaatgatcatgaatcatgattcctcatttct |
114 |
Q |
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| T |
44041399 |
aagggtgggagagctgtagcttatgccagtgaatacacaattctgcatgatagttatgctgcaaatttccaatgatcatga-------ttcttcatttct |
44041307 |
T |
|
| Q |
115 |
atttagtaattatctcataaagggatagaaaatagacacaatcaagattttaaaaacaatcagccaccacagttgtggctgcaattataaactcttttag |
214 |
Q |
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| T |
44041306 |
atttagtaattatctcataaagggatagaaaatagacacaatcaagattttaaaaacaatcagccaccacagttgtggccgcaattaaa---tcttttag |
44041210 |
T |
|
| Q |
215 |
ttccagtatcagtcgaattcatgcaatcgccatttgaaaccttaaataatcagccaccacagttgtggccgccacgctattacaaagccttttatgtttg |
314 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| |
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| T |
44041209 |
ttccagtatcagtcgaatccatgcaatcgccatttaaaaccttaaataatcagccaccacagttgtggccgctaagctgttacaaagccttttatgtttg |
44041110 |
T |
|
| Q |
315 |
agtatcagtcaaatcatgcgatcacgatttgaaaccttaaataatacgactaatgtaatgcaattacacacatacccgacaaggccgaggaagaagaatt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44041109 |
agtatcagtcaaatcatgcgatcacgatttgaaaccttaaataatacgactaatgtaatgcaattacacacatacccgacaaggccgaggaagaaaaatt |
44041010 |
T |
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| Q |
415 |
tggtaagaagtgagaaagaaaggggtggtctt |
446 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
44041009 |
tggcaagaagtgagaaagaaaggggtggtctt |
44040978 |
T |
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