View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_2 (Length: 599)
Name: NF9873_low_2
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Complemental strand, 16325584 - 16325015
Alignment:
| Q |
17 |
catgctactgctcaatcaatagatgagggtgaggagaaataaatagcccattccaaacttagcataccaaattagaattctagtgtaagcaagttgttca |
116 |
Q |
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| T |
16325584 |
catgctactgctcaatcaatagatgagggtgaggagaaataaatagcccattccaaacttagcataccaaattagaattctagtgtaagcaa-ttgttca |
16325486 |
T |
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| Q |
117 |
gaaaaatccatttttaaatttagtttggaataacatgtagtaagattttaattaccttttagtcaaatttcgaattatttggtccattttattgaaaaac |
216 |
Q |
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| T |
16325485 |
gaaaaatccatttttaaatttagtttggaataacatgtagtaagattttacttatcttttagtcaaatttcaaattatttggtccattctattgaaaaac |
16325386 |
T |
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| Q |
217 |
agagggttaagacaacaatattaaaattctaatatggtattgataaagagtcgagacgacgctttattagaacctaagcataagctgcatttggaaaatt |
316 |
Q |
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| T |
16325385 |
agaggattaagacaacaatattaaaattctaatatggtattgataaagagtcgagacaacgctttat-agaacctaaccataagctgcatttggaaaatt |
16325287 |
T |
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| Q |
317 |
caataaccacatcaaaaccatacgcttcagtaactctatgatttgttgcttctacaaacccactatggtaaaacatatggatacgctacgagcatgcatc |
416 |
Q |
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|||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16325286 |
caataaccacgtcgaaaccatacgcttcagtaattctatgatttgttgcttctacaaacccactatggtaaaacatatggatacgctacgagcatgcatc |
16325187 |
T |
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| Q |
417 |
caaacgttttctaatagtctctttaatttggcgttgaaagttccaaatgcgcatctcaatgagtaacggtcatggaaaaagataaactagaaaactcagc |
516 |
Q |
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||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16325186 |
caaacattttctaatagtctctttaatttgacggtgaaagttccaaatgcgcatctcaatgagtaacggtcatggaaaaagataaactagaaaactcagc |
16325087 |
T |
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| Q |
517 |
tttcacgttgacattgttttatgtcacggttttgctaaacgcaacttcataccaaacatattctaagtaact |
588 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16325086 |
tttcaccttgatattgttttatgtcacggttttgctaaacgcaacttcatactaaacatattctaagtaact |
16325015 |
T |
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