View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_20 (Length: 458)
Name: NF9873_low_20
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 27 - 349
Target Start/End: Original strand, 12079970 - 12080305
Alignment:
| Q |
27 |
aaatggactttatttccatttttctctagtaactttggtggttgttgatgtaggagttagaaatatgtagagg-tatttataggctccaaaaatccttta |
125 |
Q |
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| T |
12079970 |
aaatggactttatctccatttttgtgtagtaactttggtggttgttgatgtaggagttagaaatatgtagagggtatttataggctccaaaactccttta |
12080069 |
T |
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| Q |
126 |
tacaaagtacgttgcatgaatcatgtagttaa----------atgtcagtgtttaaatcttgatgcaaattcaaatgtagaggaaaagataaggaagcaa |
215 |
Q |
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| T |
12080070 |
tacaaagtaccttgcatgaatcatgtagttaactgtaattgaatgtcagtgtttaaatcttgatgcaaattcaaatgtagaggaaaagataaggaggcaa |
12080169 |
T |
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| Q |
216 |
gagnnnnnnnnnnnncaaatgtcagaaagaagaagaagaaaaacccacgaggtaatataaatatcattttcattgaatgcgtgagaaacgtgggaactaa |
315 |
Q |
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| T |
12080170 |
gagtttcttctttttcaaatgtcagaaagaagaagaagaaaaacccacgaggtaatataaatatcattttcattgaatgcgtgagaaacgtgggaactaa |
12080269 |
T |
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| Q |
316 |
tcgacctccgt--actggtgcatataacaaaaatat |
349 |
Q |
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| T |
12080270 |
tcgacctccgtagactggtgcatataacaaaaatat |
12080305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 12081390 - 12081453
Alignment:
| Q |
377 |
aggataagacaacttcagttgtacaattattttaaagtaacataataaggttggaggtaagaga |
440 |
Q |
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| T |
12081390 |
aggataagacaacttcagttgtacaattggtttaaagtaacatgataagattggaggtaagaga |
12081453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 12096613 - 12096696
Alignment:
| Q |
27 |
aaatggactttatttccatttttctctagtaactttggtggttg-ttgatgtaggagttagaaatatgtaga-ggtatttatag |
108 |
Q |
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| T |
12096613 |
aaatggactttctctccatttttgtgtagtaactttggtggttgtttgatgtaggagttagaaatatataaagggtatttatag |
12096696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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