View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_24 (Length: 447)
Name: NF9873_low_24
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 437
Target Start/End: Complemental strand, 26268200 - 26267772
Alignment:
| Q |
9 |
aataagattcttatatattatgaatacgaagtattctaaaattaaaatatatgccacacaaccccatacactaaactaaactaaatcctcttacaacaca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
26268200 |
aataagattcttatatattatgaatacgaagtattctaaaattaaaatatatgccacacaaccccataaactaaactaaactaaatcctctcacaacaca |
26268101 |
T |
|
| Q |
109 |
caagcatgcgcgcgtgcgcgtgcacacacatatgcatgtgattaattatatttacttcacaattcattcatcttttcaattcatagaatattatttaaga |
208 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26268100 |
caagcatgcgcgcgtgcgcgcgcacacacatatgcatgtgattaattatatttacttcacaattcattcatcttttgaattcatagaatattatttaaga |
26268001 |
T |
|
| Q |
209 |
atggctaatctaatttcattgttctttgtcatgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactatatgttt |
308 |
Q |
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||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26268000 |
atgactaatctactttcattattctttgtcatgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactatatgttt |
26267901 |
T |
|
| Q |
309 |
agctgtagtagttcaagctgaagtcatttactattcctaatttaagtttgagaggctatgaagtaattgataacatcaaagaagagctagaaaagaaaga |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26267900 |
agctgtagtagttcaagctgaagtcatttactattcctaatttaagtttgagaggttacgaagtaattgataacatcaaagaagagctagaaaagaaaga |
26267801 |
T |
|
| Q |
409 |
tctcgctgtagtttcttgtgctgatgtcc |
437 |
Q |
| |
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|| || ||| ||||||||||||||||||| |
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| T |
26267800 |
tcccgatgtggtttcttgtgctgatgtcc |
26267772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 26265622 - 26265338
Alignment:
| Q |
9 |
aataagattcttatatattatgaatacgaagtattctaaaattaaaatatatgccacacaaccccatacactaaactaaactaaatcctcttacaacaca |
108 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26265622 |
aataagattcttatatattatgaatatcaactattttaaaattaaaatatatgccacacaaccccataaactaaactaaactaaatcctcttacaacaca |
26265523 |
T |
|
| Q |
109 |
caagcatgcgcgcgtgcgcgtgcacacacatatgcatgtgattaattatatttacttcacaattcattcatcttttcaattcatagaatattatttaaga |
208 |
Q |
| |
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||||||||||||||| ||||| |||| ||||| |||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
26265522 |
caagcatgcgcgcgt----------acacacatgcctgtgactaattacatttacttcacaattcatacatcttttgaattcatagaatatcatttaaga |
26265433 |
T |
|
| Q |
209 |
atggctaatctaatttcattgttctttgtcatgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactata |
303 |
Q |
| |
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||| |||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26265432 |
atgactaatctactttcattgttctttgtcacaagaatgatattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactata |
26265338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 435
Target Start/End: Complemental strand, 26264680 - 26264557
Alignment:
| Q |
312 |
tgtagtagttcaagctgaagtcatttactattcctaatttaagtttgagaggctatgaagtaattgataacatcaaagaagagctagaaaagaaagatct |
411 |
Q |
| |
|
|||||||||||| ||| ||| |||||||| ||||||||| ||||| ||||||||||||||||||| |||||||| |||| |||||||||||||| ||| |
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| T |
26264680 |
tgtagtagttcatgctcaagccatttactgctcctaatttgagtttaagaggctatgaagtaattgttaacatcagagaatagctagaaaagaaatgtct |
26264581 |
T |
|
| Q |
412 |
cgctgtagtttcttgtgctgatgt |
435 |
Q |
| |
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| ||| ||||| ||||||||||| |
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|
| T |
26264580 |
tggtgtggtttcgtgtgctgatgt |
26264557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 26264793 - 26264699
Alignment:
| Q |
170 |
attcattcatcttttcaattcatagaatattatttaagaatggctaatctaatttcattgttctttgtcatgagaatgacattgatttgtttcaaa |
265 |
Q |
| |
|
||||||||||||||| |||| || || || |||||| |||| ||||| || ||||| |||||||||||||| |||||||||||| |||||||||| |
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| T |
26264793 |
attcattcatcttttaaattt-tacaagatcatttaaaaatgactaatatactttcactgttctttgtcatgggaatgacattgacttgtttcaaa |
26264699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 26266322 - 26266253
Alignment:
| Q |
40 |
tattctaaaattaaaatatatgccacacaaccccatacactaaactaaactaaatcctcttacaacacac |
109 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| | | |||||| |||||||||| |||| || |||||| |
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|
| T |
26266322 |
tattctaaaactaaaatatatgacacacaaccctacaaactaaaataaactaaattctctcaccacacac |
26266253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 26267264 - 26267185
Alignment:
| Q |
12 |
aagattcttatatattatgaatacgaagtattctaaaattaaaatatatgccacacaaccccatacactaaactaaactaaa |
93 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||||||||||| || ||||||| | | ||||||||||| |||| |
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|
| T |
26267264 |
aagattcttatata--atgaatatcaagtattctataattaaaatatataacatacaaccctacaaactaaactaaagtaaa |
26267185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 37 - 435
Target Start/End: Original strand, 23574169 - 23574570
Alignment:
| Q |
37 |
aagtattctaaaattaaaatatatgccacacaaccccatacactaaactaaactaaa---------tcctcttacaacacacaagcatgcgcgcgtgcg- |
126 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| | | |||||||||||||||| |||||| || ||||| ||| | ||||||||| |
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| T |
23574169 |
aagtattctaaaactaaaatatatgccacacaaccctacaaactaaactaaactaaactaaactaatcctctcacgacacat--gcaag-gcgcgtgcgt |
23574265 |
T |
|
| Q |
127 |
cgtgcacacacatatgcatgtgattaattatatttacttcacaattcattcatcttttcaattcatagaatattatttaagaatggctaatctaatttca |
226 |
Q |
| |
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|| ||||||| |||||||||| |||||||||||||||||| ||||| ||||||||| || || |||||||| |||||||||||||||||| ||||| |
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| T |
23574266 |
cgcctacacacacatgcatgtgactaattatatttacttcacgattcactcatcttttaaaatcttagaatatcatttaagaatggctaatc---tttca |
23574362 |
T |
|
| Q |
227 |
ttgttctttgtcatgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactatatgtttagctgtagtagttcaagc |
326 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||| | | || ||||||||| || |
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|
| T |
23574363 |
ccgttctttgtcttgagaatgacattgatttgtttc-aaattgagagtaataaacggcttgagcgtgaactactacggctaaacatgcagtagttcatgc |
23574461 |
T |
|
| Q |
327 |
tgaagtcatttactattcctaatttaagtttgagaggctatgaagtaattgataacatcaaagaagagctagaaaagaaagatctcgctgtagtttcttg |
426 |
Q |
| |
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| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||| |
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| T |
23574462 |
tcaagtcatgtactactcctaatttaagtttgagaggctatgaagtaattgataacatcaaagaagagctagaaaagaaatgtcccaatgtggtttcttg |
23574561 |
T |
|
| Q |
427 |
tgctgatgt |
435 |
Q |
| |
|
|| |||||| |
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|
| T |
23574562 |
tgttgatgt |
23574570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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