View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9873_low_25 (Length: 435)
Name: NF9873_low_25
Description: NF9873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9873_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 13039043 - 13039454
Alignment:
| Q |
19 |
aaagttacaatccattatcattaataaccttactaaaatttgatcaaaaagtattaaccttaacaatttacaatagcgatcttgtgcacaatttacagta |
118 |
Q |
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| T |
13039043 |
aaagttacaatccattatcattaataaccttactaaaatttgatcaaaaagtattaacctta-caatttacaatagcgatcttgtgcacaatttacagta |
13039141 |
T |
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| Q |
119 |
tttcatacaactgcaatg---aatgaatgaatgaattaagtgtagtaaagtttcacatacataaatttgaatgaatgaatgatatgtttgtttatataat |
215 |
Q |
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| T |
13039142 |
tttcatacaactgcaatgtcaagtttaaaaaaaattcaagtgtagtaaagtttcacatacataaatttgaatgaatgaatgatatgtttgtttatataat |
13039241 |
T |
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| Q |
216 |
tagggttacacaaggtggnnnnnnnnnngtatcagaatcattccacgcgtaagttacgaaactgcttcttcaacaatgaccaatatgagatacttgcctt |
315 |
Q |
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| T |
13039242 |
tagggttacacaaggtggaaaaaaaaaaatatcagaatcattccacgcgtaagttacgaaactgcttcttcaacaatgaccaatatgagatatttgcctt |
13039341 |
T |
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| Q |
316 |
tcaagtttctccgaaagttttttggttgatgacatgccatggacattcacaataatgtttttattcgaaaacacatgaattgtatttccaactctaaaat |
415 |
Q |
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| T |
13039342 |
tcaagtttctcttaaagttttttggttgattacatgccatggacattcacaataatgtttttatcccaaaacacgtgaattgtatttccaactctaaaat |
13039441 |
T |
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| Q |
416 |
ctagttcatctca |
428 |
Q |
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| T |
13039442 |
ctagttcatctca |
13039454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 13109038 - 13109448
Alignment:
| Q |
19 |
aaagttacaatccattatcattaataaccttactaaaatttgatcaaaaagtattaaccttaacaatttacaatagcgatcttgtgcacaatttacagta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13109038 |
aaagttacaatccattatcattaataaccttactaaaatttgatcaaaaagtattaacctta-caatttacaatagcgatcttgtgcacaatttacagta |
13109136 |
T |
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| Q |
119 |
tttcatacaactgcaatg---aatgaatgaatgaattaagtgtagtaaagtttcacatacataaatttgaatgaatgaatgatatgtttgtttatataat |
215 |
Q |
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| T |
13109137 |
tttcatacaactgcaatgtcaagtttaaaaaaaattcaagtgtagtaaagtttcacatacataaatttgaatgaatgaatgatatgtttgtttatataat |
13109236 |
T |
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| Q |
216 |
tagggttacacaaggtggnnnnnnnnnngtatcagaatcattccacgcgtaagttacgaaactgcttcttcaacaatgaccaatatgagatacttgcctt |
315 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13109237 |
tagggttacacaaggtggaaaaaaaaaa-tatcagaatcattccacgcgtaagttacgaaactgcttcttcaacaatgaccaatatgagatatttgcctt |
13109335 |
T |
|
| Q |
316 |
tcaagtttctccgaaagttttttggttgatgacatgccatggacattcacaataatgtttttattcgaaaacacatgaattgtatttccaactctaaaat |
415 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |
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| T |
13109336 |
tcaagtttctcttaaagttttttggttgattacatgccatggacattcacaataatgtttttatcccaaaacacgtgaattgtatttccaactctaaaat |
13109435 |
T |
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| Q |
416 |
ctagttcatctca |
428 |
Q |
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||||||||||||| |
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| T |
13109436 |
ctagttcatctca |
13109448 |
T |
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